View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2588_low_1 (Length: 484)
Name: NF2588_low_1
Description: NF2588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2588_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 173 - 468
Target Start/End: Complemental strand, 3594793 - 3594486
Alignment:
| Q |
173 |
gaaaaatactcccagcagcactactaaaaatagctgaacagccgccttaaaaaaccaacaaaaccgctgtgaatccagagagcacatcacagctcaaaca |
272 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594793 |
gaaaaatactaccagcagcactactaaaaatagctgaacagccgccttaaaaaaccaacaaaaccgctgtgaatccagagagcacatcacagctcaaaca |
3594694 |
T |
|
| Q |
273 |
cagtacctccttaagcaatctctagattgcaattccactc------------aggcgaaacattcaattaatctctagtttttccttcagaattactgtt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3594693 |
cagtacctccttaagcaatctctagattgcaattccactcgtaaaataggcaaggcgaaacattcaattaatctctagtttttccttcataattactgtt |
3594594 |
T |
|
| Q |
361 |
acggacctgtaaagcagtttaggagtcaagacaaaaacctcaatatgtaaataattaaactttattataagctcaaatgttctatagtcatgaccataat |
460 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3594593 |
acggacctgtaaagcagtttaggagccaagataaaaacctcaatatgtaaataattaaactttattataagctcatatgttctatagtcatgaccataat |
3594494 |
T |
|
| Q |
461 |
cttatttt |
468 |
Q |
| |
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|||||||| |
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| T |
3594493 |
cttatttt |
3594486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 3595171 - 3595095
Alignment:
| Q |
10 |
gcaaaggccagcaaaaacaacaatataaaaacaaacagggtgccttctataggcggcacaccccaaccataaaacca |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3595171 |
gcaaaggccagcaaaaacaacaatataaaaacaaacagggtgccttctataggcggcacaccccaactataaaacca |
3595095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 5179730 - 5179654
Alignment:
| Q |
10 |
gcaaaggccagcaaaaacaacaatataaaaacaaacagggtgccttctataggcggcacaccccaaccataaaacca |
86 |
Q |
| |
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|||||||||||||||||||||| || |||| ||||||||||||| | ||||||||| |||||||||||||||||||| |
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| T |
5179730 |
gcaaaggccagcaaaaacaacagtacaaaatcaaacagggtgccgtatataggcggaacaccccaaccataaaacca |
5179654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 23353051 - 23352973
Alignment:
| Q |
10 |
gcaaaggccagcaaaaacaacaatataaaaac-aaacagggtgccttctataggcggcacaccccaaccataaaaccag |
87 |
Q |
| |
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|||||||||| |||||||||||||| |||||| ||| ||||||| | ||||||||| |||||||||||| |||||||| |
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| T |
23353051 |
gcaaaggccatcaaaaacaacaatagaaaaacaaaatcgggtgccgtatataggcggaacaccccaaccaaaaaaccag |
23352973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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