View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2588_low_2 (Length: 427)
Name: NF2588_low_2
Description: NF2588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2588_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 37106058 - 37106404
Alignment:
| Q |
18 |
attatagcctaatgcacataagaagttgaagtaatcattcgttgttatgtcataaacaagaccaggatccattgcactgtttggttgaacatgtcctgct |
117 |
Q |
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| T |
37106058 |
attatagcctaatgcacataagaagttgaagtaatcattcgttgttatgtcataaacaagaccaggatccattgcactgtttggttgaacatgtcctgct |
37106157 |
T |
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| Q |
118 |
ccgtagctaaacggcgtagcttggcttttagtagcattcataattggttctgccttattgtctaatgttgtagctgaaagtaatagaggacaattatgac |
217 |
Q |
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| T |
37106158 |
ccgtagctaaacggcgtagcttggcttttagtagcattcataattggttctgccttattgtctaatgttgtagctgaaagtaatagaggacaattatgac |
37106257 |
T |
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| Q |
218 |
aaagttgagatgaatgttatatggcagtgataagatttttcttagctcatacaaaattttgtaactttgatctgcttaatgaaaaaatttaatttgacaa |
317 |
Q |
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| T |
37106258 |
aaagttgagatgaatgttatatagcagtgataagattttttttagctcatacaaaattttgtaactttgatctgcttaatgaaaaaatttaatttgacaa |
37106357 |
T |
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| Q |
318 |
ttacactggttaaattcacattgtacgaagttcaaggtgtaagtata |
364 |
Q |
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| T |
37106358 |
ttacaccggttaaattcacattgtacgaagttcaaggtgtaagtata |
37106404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 37106431 - 37106486
Alignment:
| Q |
360 |
gtataaattcgaatttcacagtaaagttcattagatgttatgttaaagttgatatt |
415 |
Q |
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| T |
37106431 |
gtataaaatcgaatttcacagtaaagttcattagatgttatgttaaagttgatatt |
37106486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 31061497 - 31061545
Alignment:
| Q |
67 |
tcataaacaagaccaggatccattgcactgtttggttgaacatgtcctg |
115 |
Q |
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| T |
31061497 |
tcataaacaagtccaggatctattgcactgttgggttgaatatgtcctg |
31061545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 31049100 - 31049148
Alignment:
| Q |
67 |
tcataaacaagaccaggatccattgcactgtttggttgaacatgtcctg |
115 |
Q |
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| T |
31049100 |
tcataaacaagtccgggatccattgcagtgttgggttgaatatgtcctg |
31049148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 31144077 - 31144125
Alignment:
| Q |
67 |
tcataaacaagaccaggatccattgcactgtttggttgaacatgtcctg |
115 |
Q |
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| T |
31144077 |
tcataaacaagtcctggatctattgcactgttgggttgaatatgtcctg |
31144125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 31161903 - 31161951
Alignment:
| Q |
67 |
tcataaacaagaccaggatccattgcactgtttggttgaacatgtcctg |
115 |
Q |
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| T |
31161903 |
tcataaacaagtcctggatctattgcactgttgggttgaatatgtcctg |
31161951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 31244006 - 31244054
Alignment:
| Q |
67 |
tcataaacaagaccaggatccattgcactgtttggttgaacatgtcctg |
115 |
Q |
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| T |
31244006 |
tcataaacaagtcctggatctattgcactgttgggttgaatatgtcctg |
31244054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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