View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2589_high_13 (Length: 248)
Name: NF2589_high_13
Description: NF2589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2589_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 38667260 - 38667128
Alignment:
| Q |
98 |
ttaaaaaagagagttggttatttagattttagtcaaaatttacatactacagtctatacgaatatatctaattttttcagatatatcctgtgaggtgatt |
197 |
Q |
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| T |
38667260 |
ttaaaaaagagagttgtttatttagattttagtcaaaatttacatactacagtctatacgaatatatctaattttttcagatatattctgtgaggtgatt |
38667161 |
T |
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| Q |
198 |
gaaatagaatatgaatacaagattatacggaat |
230 |
Q |
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| T |
38667160 |
gaaatagaatatgaatacaagattatacggaat |
38667128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 38668432 - 38668542
Alignment:
| Q |
115 |
ttatttagattttagtcaaaatttacatactacagtctatacgaatatatct-aattttttcagatatatcctgtgaggtgattgaaatagaatatgaat |
213 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||| |||||||| | | ||||||||||||||| ||| ||||||||||||| |||| ||||| |
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| T |
38668432 |
ttatttagattttagtcaaaatttacgtactacaacctatatgaatatatttcagttttttcagatatattatgtaaggtgattgaaattgaatgtgaat |
38668531 |
T |
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| Q |
214 |
acaagattata |
224 |
Q |
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|||||| |||| |
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| T |
38668532 |
acaagaatata |
38668542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 38668347 - 38668428
Alignment:
| Q |
1 |
aagagcgatttacaagagaaatcaatcactttttgaaggaaccatttcctttcaaaatcaatatttatgcaccatccaaagagt |
84 |
Q |
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| T |
38668347 |
aagagcgatttacaagagaaaacaatcactttt-gaaggatc-atttcctttcaaaatcaatatttatgcatcattcaaagagt |
38668428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 38674961 - 38674893
Alignment:
| Q |
115 |
ttatttagattttagtcaaaatttacatactacagtctatacgaatatatct-aattttttcagatata |
182 |
Q |
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|||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||| |||| |
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| T |
38674961 |
ttatttagattttagtcaaaatttacatactacaacttaaaagaatatatctaaattttttcaggtata |
38674893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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