View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2589_low_1 (Length: 565)
Name: NF2589_low_1
Description: NF2589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2589_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 5159664 - 5160210
Alignment:
| Q |
1 |
aactacaaattctgaagaatagagagagcataaaaaagacgaggtatcttgttcttgtgataagataatatgctcttacgtggcaacatctatgctcctg |
100 |
Q |
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| T |
5159664 |
aactacaaattctgaagaatagagagagcataaaaaagacgaggtatcttgttcttgtgataagataatatgctcttacgtggcaacatctatgctcctg |
5159763 |
T |
|
| Q |
101 |
ttccatcctccctacgacttaacttcaaatcacaaactcacccacgaaacctcaccatttcttgtcaagcaagcctagactacccactctcaatatccga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159764 |
ttccatcctccctacgacttaacttcaaatcacaaactcacccacgaaacctcaccatttcttgtcaagcaagcctagactacccactctcaatatccga |
5159863 |
T |
|
| Q |
201 |
cgaaaccctagaaaagcgaggtttcattctccgccgaaccgcagaggggttaaacctagaagcacttaacaaaatattcgtagcagtagggtttccgcgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5159864 |
cgaaaccctagaaaagcgaggtttcattctccgccgaaccgcagaggggttaaacctagaagcacttaacaaaatatttgtagcagtagggtttccgcgg |
5159963 |
T |
|
| Q |
301 |
cgcgacccggagaaaatacgcgttgcactcgagcacactgactcattggtatggatacaagagaggaagtcacagaataatgcggttgcatttgcaagag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5159964 |
cgcgacccggagaaaatacgcgttgcactcgagcacactgactcattggtatggatacaagagaggaagtcgcagaataatgcggttgcatttgcaagag |
5160063 |
T |
|
| Q |
401 |
ctactggtgatggtgttttcaatgcgataatatgggatgttgttgttgatccttcgtttcaagggcttggtctagggaaagctgttgtggagaggcttat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5160064 |
ctactggtgatggtgttttcaatgcgataatatgggatgttgttgttgatccttcgtttcaagggcttgggctagggaaagctgttgtggagaggcttat |
5160163 |
T |
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| Q |
501 |
gaaggatcttgtaggaaaagggattaccaatatttctctttattctg |
547 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5160164 |
gagggatcttgtaggaagagggattaccaatatttctctttattctg |
5160210 |
T |
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