View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2589_low_16 (Length: 248)
Name: NF2589_low_16
Description: NF2589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2589_low_16 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 14773753 - 14773988
Alignment:
| Q |
12 |
gaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttttt |
111 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773753 |
gaacaaaaactgca-tgtcacatgaggccaaagactccttgttggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttttt |
14773851 |
T |
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| Q |
112 |
gttttcctacaaataaaacgataaatcatgaattggaagaaataaatgccaacacacaaaatgaatacatggaattaagactttggtgtgagaaaaggtg |
211 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773852 |
gttttcctacaaataaaacgatgaatcatgaattggaagaaataaatgccaaaacacaaaatgaatacatggaattaagactttggtgtgagaaaaggtg |
14773951 |
T |
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| Q |
212 |
aaagaaatgaaatgtctttcactgtcacaataaaaat |
248 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
14773952 |
aaagaaatgaaatgtctttcactgtcacaataaaaat |
14773988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 17881020 - 17881248
Alignment:
| Q |
13 |
aacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttg |
112 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
17881020 |
aacaaaaaccgcaatgtcacatgaggccaaagactccttattggctagcagctttgtgactccaccttcagaaatctctctcagcacaagatattttttg |
17881119 |
T |
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| Q |
113 |
ttttcctacaaataaaacgataaatcatgaattggaagaaataaatgcca-acacacaaaatgaatacatggaattaagactttggtgtgagaaaaggtg |
211 |
Q |
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| T |
17881120 |
ttttcctacaaacaaaatgattaaccgtgaattggaagatgtaattccaatatatacaaaatgaatacatcaaatgaagactttggtgcaggaaaaggcg |
17881219 |
T |
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| Q |
212 |
aaagaaatgaaatgtctttcactgtcaca |
240 |
Q |
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| T |
17881220 |
aaagaaatgaaatgtctttctctgtcaca |
17881248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 15015515 - 15015727
Alignment:
| Q |
12 |
gaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttttt |
111 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||| | || ||||||| ||| ||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
15015515 |
gaacaaaaactgcaatgtcacatgagcccagagactccttgtttgctagcagctttgtaactccaccttcagaaatctctctcagcacaatatatttttt |
15015614 |
T |
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| Q |
112 |
gttttcctacaaataaaacgataaatcatgaattggaagaaataaatgccaaca--cacaaaatgaatacatggaattaagactttggtgtgagaaaagg |
209 |
Q |
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||||||||||||| |||| | |||| ||||||||||||| |||| | ||| | ||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
15015615 |
gttttcctacaaacaaaatggtaaacaatgaattggaagatataagtatcaatatgtacaaaatgaatacatcaaatgaagactttggtgtgagaaaagt |
15015714 |
T |
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| Q |
210 |
tgaaagaaatgaa |
222 |
Q |
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|||||||| |||| |
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| T |
15015715 |
tgaaagaactgaa |
15015727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 15048253 - 15048403
Alignment:
| Q |
13 |
aacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttg |
112 |
Q |
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|||||||| |||||||||||||||||||||||||| ||| |||| ||||||| ||||||||| | ||||||||||||||||| |||||||||||||||| |
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| T |
15048253 |
aacaaaaattgcaatgtcacatgaggccaaagacttcttattggctagcagctttgtgactcctccttcagaaatctctctcagcacaagatattttttg |
15048352 |
T |
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| Q |
113 |
ttttcctacaaataaaacgataaatcatgaattggaagaaataaatgccaa |
163 |
Q |
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|||||||||||| |||| ||| || | |||| ||||||| ||||||||||| |
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| T |
15048353 |
ttttcctacaaacaaaatgattaaccgtgaactggaagatataaatgccaa |
15048403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 54158966 - 54159114
Alignment:
| Q |
12 |
gaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttttt |
111 |
Q |
| |
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|||||| || |||||||||||| ||||||||||||||||| | ||||||||| || | |||||| ||||| ||||||||||| |||||||||||| || |
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| T |
54158966 |
gaacaataattgcaatgtcacaagaggccaaagactccttattcgccagcagccctttaactccatcttcaggaatctctctcagcacaagatatttctt |
54159065 |
T |
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| Q |
112 |
gttttcctacaaataaaacgataaatcatgaattggaagaaataaatgc |
160 |
Q |
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||| ||| |||| |||| |||||| ||| ||| ||||||| |||||| |
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| T |
54159066 |
ctttccctgcaaacaaaatgataaaacataaatatgaagaaagaaatgc |
54159114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 53868344 - 53868220
Alignment:
| Q |
12 |
gaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttttt |
111 |
Q |
| |
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|||| |||||||||| |||||| ||||||||||||| || | |||||||||||| | |||||| ||||| ||| ||||||| |||||||||||| || |
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| T |
53868344 |
gaacgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaagatatttctt |
53868245 |
T |
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| Q |
112 |
gttttcctacaaataaaacgataaa |
136 |
Q |
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|||| ||| |||| |||| |||||| |
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| T |
53868244 |
gtttccctgcaaacaaaatgataaa |
53868220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 51365878 - 51366025
Alignment:
| Q |
12 |
gaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctct-gtgactccacattcagaaatctctctcaacacaagatattttt |
110 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||| | |||||||| ||| |||||||| |||| ||||||| |||||||||||||||| | |
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| T |
51365878 |
gaacaaaaatggcaatgtcacaagaggccaaagactccttattagccagcagttctcttgactccatcttcatgaatctctttcaacacaagatatttct |
51365977 |
T |
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| Q |
111 |
tgttttcctacaaataaaacgataaatcatgaattggaagaaataaatgc |
160 |
Q |
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||||| ||| ||| | || |||||| |||||| | ||||||| |||||| |
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| T |
51365978 |
tgtttccctgcaact--aatgataaaacatgaacttgaagaaagaaatgc |
51366025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 36876577 - 36876445
Alignment:
| Q |
14 |
acaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttgt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||| ||| ||| | ||||||| ||||||| ||||||||| ||| |
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| T |
36876577 |
acaaaaactgcaatgtcacatgaggccaaagactccttgtcggccaccagtcttgcaacttcaccttctggaatctctttcaacacgagatattttctgt |
36876478 |
T |
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| Q |
114 |
tttcctacaaataaaacgat-aaatcatgaatt |
145 |
Q |
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|||||| |||| ||||| || |||||||||||| |
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| T |
36876477 |
tttcctgcaaacaaaacaataaaatcatgaatt |
36876445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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