View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2589_low_2 (Length: 400)

Name: NF2589_low_2
Description: NF2589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2589_low_2
NF2589_low_2
[»] chr2 (6 HSPs)
chr2 (16-392)||(11767110-11767485)
chr2 (164-342)||(10890421-10890600)
chr2 (114-341)||(27611868-27612096)
chr2 (220-342)||(23164406-23164529)
chr2 (220-342)||(23575663-23575786)
chr2 (220-334)||(22405829-22405944)
[»] scaffold0402 (1 HSPs)
scaffold0402 (145-341)||(7577-7774)
[»] chr6 (3 HSPs)
chr6 (125-341)||(16139041-16139258)
chr6 (145-341)||(21431772-21431969)
chr6 (164-334)||(11543918-11544089)
[»] chr7 (3 HSPs)
chr7 (125-344)||(37470192-37470411)
chr7 (145-341)||(14276544-14276741)
chr7 (238-342)||(11623649-11623753)
[»] scaffold0021 (1 HSPs)
scaffold0021 (164-342)||(119929-120108)
[»] scaffold0032 (2 HSPs)
scaffold0032 (139-334)||(22186-22379)
scaffold0032 (252-342)||(29186-29276)
[»] chr3 (2 HSPs)
chr3 (139-316)||(17342686-17342861)
chr3 (114-293)||(13812692-13812872)
[»] scaffold0596 (1 HSPs)
scaffold0596 (145-341)||(3728-3925)
[»] chr8 (1 HSPs)
chr8 (114-342)||(31962535-31962764)
[»] scaffold0634 (1 HSPs)
scaffold0634 (220-342)||(3992-4115)
[»] chr1 (2 HSPs)
chr1 (227-344)||(48179969-48180086)
chr1 (17-108)||(48180231-48180324)


Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 11767485 - 11767110
Alignment:
Q  16 atgttaattgaggaaaaataatattagtctcgaattaccaacatgttaatagttttagtaagaggattaattattgaataaaataaaggaattccgttaa 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11767485 atgttaattgaggaaaaataatattagtctcgaatgaccaacatgttaatagttttagtaagaggattaattattgaataaaataaaggaattccgttaa 11767386  T
Q  116 accgtgattctagacctatcttcattggtttacatcttcgagtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatattta 215  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11767385 accgtgattctagacctatcttcattgatttacatcttcgagtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatattta 11767286  T
Q  216 ttcatctaaacaataaataatattaattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacactt 315  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  11767285 ttcatctaaacaataaataatattaattagtttggaacttgttaattaattttt-tggacacgataatctttcatacttctcttgtgatagagcacactt 11767187  T
Q  316 gatctaagtgtatttttagtgcaacaatagaatacaagattatgggaacttaaaccaaaaccaaaggaatataaata 392  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  11767186 gctctaagtgtatttttagtgcaacaatagaatacaagattatgggaacttaaaccaaaaccaaatgaaaataaata 11767110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 342
Target Start/End: Original strand, 10890421 - 10890600
Alignment:
Q  164 ttattcttcatcattactttctacttagttaccaaagtcattcaaatatttattcatctaaacaataaat-aatattaattagtttggaacttcttaatt 262  Q
    |||| |||| |||||||||| |  ||||||||| ||  ||||| | || || ||| |||||| ||||||| ||| ||||||||||||| |||| ||||||    
T  10890421 ttatccttcgtcattactttttctttagttaccgaaaccattctattacttgttcgtctaaataataaattaatcttaattagtttggtacttgttaatt 10890520  T
Q  263 aatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaagtgtatttttagtgcaacaa 342  Q
    |||   |||||| |||||||||||||||||| ||  || ||||||| ||||||| ||||||||| ||||||| |||||||    
T  10890521 aatccctgtggatacgataatcttttatactacttctgcgatagagtacacttgctctaagtgtgtttttagcgcaacaa 10890600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 341
Target Start/End: Original strand, 27611868 - 27612096
Alignment:
Q  114 aaaccgtgattctagacctatcttcattggtttacatcttcgagtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatatt 213  Q
    |||||||||  |||||||| |||  |||| ||||||||||||   ||||||  |||||| || ||||||| ||||| |||||| ||   |||| | || |    
T  27611868 aaaccgtgaccctagacctctctctattgatttacatcttcgcacttttatccttcttcgtcgttactttttacttggttaccgaaactattctactact 27611967  T
Q  214 tattcatctaaacaataaat-aatattaattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcaca 312  Q
    | ||| |||||| ||||||| ||| ||||||||||| | ||||  ||||||||   |||||| |||||||||||||||||| ||  || ||||||| |||    
T  27611968 tgttcgtctaaataataaattaatcttaattagtttagtacttgctaattaatccctgtggatacgataatcttttatactacttctgcgatagagtaca 27612067  T
Q  313 cttgatctaagtgtatttttagtgcaaca 341  Q
    |||| ||||||||| ||||||||| ||||    
T  27612068 cttgctctaagtgtgtttttagtgtaaca 27612096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 342
Target Start/End: Complemental strand, 23164529 - 23164406
Alignment:
Q  220 tctaaacaataaat-aatattaattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgat 318  Q
    |||||| ||||||| ||| ||||||||||||| || | |||| ||||   |||||| |||||||||||||||||| ||  || ||||||| ||||||| |    
T  23164529 tctaaataataaattaatcttaattagtttggtacgtgttaaataatccatgtggatacgataatcttttatactacttctgcgatagagtacacttgct 23164430  T
Q  319 ctaagtgtatttttagtgcaacaa 342  Q
    |||||||| ||||||| |||||||    
T  23164429 ctaagtgtgtttttagcgcaacaa 23164406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 342
Target Start/End: Complemental strand, 23575786 - 23575663
Alignment:
Q  220 tctaaacaataaat-aatattaattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgat 318  Q
    |||||| ||||||| ||| ||||||||||||| || | |||| ||||   |||||| |||||||||||||||||| ||  || ||||||| ||||||| |    
T  23575786 tctaaataataaattaatcttaattagtttggtacgtgttaaataatccatgtggatacgataatcttttatactacttctgcgatagagtacacttgct 23575687  T
Q  319 ctaagtgtatttttagtgcaacaa 342  Q
    |||||||| ||||||| |||||||    
T  23575686 ctaagtgtgtttttagcgcaacaa 23575663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 334
Target Start/End: Complemental strand, 22405944 - 22405829
Alignment:
Q  220 tctaaacaataaat-aatattaattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgat 318  Q
    |||||| ||||||| ||| |||||||||||   |||| |||||||||   |||||| |||||||||||||||||| ||  || ||||||| ||||||| |    
T  22405944 tctaaataataaattaatcttaattagtttattacttgttaattaatccatgtggatacgataatcttttatactacttctgcgatagagtacacttgct 22405845  T
Q  319 ctaagtgtatttttag 334  Q
    |||||||| |||||||    
T  22405844 ctaagtgtgtttttag 22405829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 145 - 341
Target Start/End: Complemental strand, 7774 - 7577
Alignment:
Q  145 ttacatcttcgagtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatatttattcatctaaacaataaat-aatattaatt 243  Q
    |||||||||||  |||||||  |||||| |||||||||| |  ||||||||| ||  ||||| | || || ||| |||||| ||||||| ||| ||||||    
T  7774 ttacatcttcgcatttttatccttcttcgtcattactttttctttagttaccgaaaccattctattacttgttcgtctaaataataaattaatcttaatt 7675  T
Q  244 agtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaagtgtatttttagtgcaaca 341  Q
    ||||||| |||| |||||||||  ||||||| |||||||||||||||||| ||  || ||||||| ||||||| ||||||||| ||||||| ||||||    
T  7674 agtttggtactttttaattaatccttgtggatacgataatcttttatactacttctgcgatagagtacacttgctctaagtgtgtttttagcgcaaca 7577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 125 - 341
Target Start/End: Complemental strand, 16139258 - 16139041
Alignment:
Q  125 ctagacctatcttcattggtttacatcttcg-agtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatatttattcatcta 223  Q
    |||||||| |||  |||| |||||||||||| | |||||||  |||||| || |||||||||| |||||| || ||  |||| || || || ||||||||    
T  16139258 ctagacctctctctattgatttacatcttcgcactttttatccttcttcgtcgttactttctatttagttgccgaaaccattgaactagttgttcatcta 16139159  T
Q  224 aacaataaataatattaattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaag 323  Q
    || |||||||||| |||| |||||||| |||| ||||||||| | || ||| |||||||||||||||| | ||  || ||||||| ||||||| ||||||    
T  16139158 aataataaataatcttaagtagtttggtacttgttaattaatctctgcggatacgataatcttttataatacttctgcgatagagtacacttgctctaag 16139059  T
Q  324 tgtatttttagtgcaaca 341  Q
    ||| ||||||| ||||||    
T  16139058 tgtgtttttagcgcaaca 16139041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 145 - 341
Target Start/End: Complemental strand, 21431969 - 21431772
Alignment:
Q  145 ttacatcttcgagtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatatttattcatctaaacaataaat-aatattaatt 243  Q
    |||||||||||  |||||||  |||||| |||||||||| |  ||||||||| ||  ||||| | || || ||| |||||| ||||||| ||| ||||||    
T  21431969 ttacatcttcgcatttttatccttcttcgtcattactttttctttagttaccgaaaccattctattacttgttcgtctaaataataaattaatcttaatt 21431870  T
Q  244 agtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaagtgtatttttagtgcaaca 341  Q
    ||||||| |||| |||||||||  ||||||| |||||||||||||||||| ||  || ||||||| ||||||| ||||||||| ||||||| ||||||    
T  21431869 agtttggtacttgttaattaatccttgtggatacgataatcttttatactacttctgcgatagagtacacttgctctaagtgtgtttttagcgcaaca 21431772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 334
Target Start/End: Original strand, 11543918 - 11544089
Alignment:
Q  164 ttattcttcatcattactttctacttagttaccaaagtcattcaaatatttattcatctaaacaataaat-aatattaattagtttggaacttcttaatt 262  Q
    |||| |||| |||||||||| |  ||||||||| ||  ||||| | ||||| ||| |||||| ||||||| ||| ||||||||||||  |||| ||||||    
T  11543918 ttatccttcgtcattactttttctttagttaccgaaaccattctattatttgttcgtctaaataataaattaatcttaattagtttgatacttgttaatt 11544017  T
Q  263 aatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaagtgtatttttag 334  Q
    |||   |||||| |||||||||||||||||| ||  || ||||||| ||||||| ||||||||| |||||||    
T  11544018 aatccctgtggatacgataatcttttatactacttctgcgatagagtacacttgctctaagtgtgtttttag 11544089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 344
Target Start/End: Complemental strand, 37470411 - 37470192
Alignment:
Q  125 ctagacctatcttcattggtttacatcttcgagtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatatttattcatctaa 224  Q
    |||||||| ||| ||||| ||||||||||||   ||||||  |||||| ||||| |||| |||||||||||||||  ||||| | || || ||| |||||    
T  37470411 ctagacctctctccattgatttacatcttcgcacttttatgcttcttcgtcatttctttttacttagttaccaaaa-cattctactacttgttcgtctaa 37470313  T
Q  225 acaataaa-taatattaattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaag 323  Q
    | |||||| |||| ||||||||||| | |||| |||||||||   |||||| |||||||||||||||||| ||  || ||| ||| ||||||| ||||||    
T  37470312 ataataaagtaatcttaattagtttagtacttgttaattaatccatgtggatacgataatcttttatactacttatgcgattgagtacacttgctctaag 37470213  T
Q  324 tgtatttttagtgcaacaata 344  Q
    ||| ||||||| |||||||||    
T  37470212 tgtgtttttagcgcaacaata 37470192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 145 - 341
Target Start/End: Complemental strand, 14276741 - 14276544
Alignment:
Q  145 ttacatcttcgagtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatatttattcatctaaacaataaat-aatattaatt 243  Q
    |||||| ||||  |||||||  |||||| |||||||||| |  ||||||||| ||  ||||| | || || ||| |||||| ||||||| ||| ||||||    
T  14276741 ttacattttcgcatttttatccttcttcgtcattactttttctttagttaccgaaaccattctattacttgttcgtctaaataataaattaatcttaatt 14276642  T
Q  244 agtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaagtgtatttttagtgcaaca 341  Q
    ||||||| |||| |||||||||   || ||| |||||||||||||||||| ||  || ||||||| ||||||| ||||||||| ||||||| ||||||    
T  14276641 agtttggtacttgttaattaatccctggggatacgataatcttttatactacttctgcgatagagtacacttgctctaagtgtgtttttagcgcaaca 14276544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 342
Target Start/End: Original strand, 11623649 - 11623753
Alignment:
Q  238 ttaattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaagtgtatttttagtgc 337  Q
    ||||||||||| | |||| ||||||||| | |||||| |||||||||||||||||| ||  |||||||||| ||||||| ||||||||| ||||||| ||    
T  11623649 ttaattagtttagtacttattaattaatctctgtggatacgataatcttttatactacttctgtgatagagtacacttgctctaagtgtgtttttagcgc 11623748  T
Q  338 aacaa 342  Q
    |||||    
T  11623749 aacaa 11623753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 342
Target Start/End: Original strand, 119929 - 120108
Alignment:
Q  164 ttattcttcatcattactttctacttagttaccaaagtcattcaaatatttattcatctaaacaataaat-aatattaattagtttggaacttcttaatt 262  Q
    |||| |||| |||||||||| |  ||||||||| ||  ||||| | || || ||| |||||| ||||||| ||| ||||||||||||| |||| ||||||    
T  119929 ttatccttcgtcattactttttctttagttaccgaaaccattctattacttgttcgtctaaataataaattaatcttaattagtttggtacttgttaatt 120028  T
Q  263 aatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaagtgtatttttagtgcaacaa 342  Q
    |||   |||||| |||||||||||||||||| ||  || ||||||| ||||||| ||||||||| ||||||| |||||||    
T  120029 aatccctgtggatacgataatcttttatactacttctgcgatagagtacacttgctctaagtgtgtttttagcgcaacaa 120108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 334
Target Start/End: Original strand, 22186 - 22379
Alignment:
Q  139 attggtttacatcttcgagtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatatttattcatctaaacaataaataatat 238  Q
    |||| ||||||||| || |||||| ||||||||   |||||||||||  ||||| ||| ||  || |||  || || ||| |||||| |||||||||| |    
T  22186 attgatttacatctccgtgttttttttattctttgccattactttct--ttagtgaccgaaaccactcatctacttgttcgtctaaataataaataatct 22283  T
Q  239 taattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaagtgtatttttag 334  Q
    |||||||||| | |||| |||||||||   |||||| |||||||||||||||||| ||  || ||||||| ||||||| ||||||||| |||||||    
T  22284 taattagtttagtacttgttaattaatccctgtggatacgataatcttttatactacttctgcgatagagtacacttgctctaagtgtgtttttag 22379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 29186 - 29276
Alignment:
Q  252 acttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaagtgtatttttagtgcaacaa 342  Q
    |||| |||||||||   |||||| |||||||||||||||||| ||  || ||||||| ||||||| ||||||||| ||||||| |||||||    
T  29186 acttgttaattaatccctgtggatacgataatcttttatactacttctgcgatagagtacacttgctctaagtgtgtttttagcgcaacaa 29276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 17342686 - 17342861
Alignment:
Q  139 attggtttacatcttcgagtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatatttattcatctaaacaataaataatat 238  Q
    |||| |||||||||  | |||||| ||||||||   |||||||||||  ||||||||||||  || |||  || || ||| |||||| |||||||||| |    
T  17342686 attgatttacatctctgtgttttttttattctttgccattactttct--ttagttaccaaaaccactcatctacttgttcgtctaaataataaataatct 17342783  T
Q  239 taattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttg 316  Q
    |||||||||| | |||| |||||||||  ||||||| |||||||||||||||||| ||  || ||||||| |||||||    
T  17342784 taattagtttagtacttgttaattaatccttgtggatacgataatcttttatactacttctgcgatagagtacacttg 17342861  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 293
Target Start/End: Complemental strand, 13812872 - 13812692
Alignment:
Q  114 aaaccgtgattctagacctatcttcattggtttacatcttcgagtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatatt 213  Q
    |||||||||  |||||||| |||  | || |||||||||||    ||||||  |||||| || ||||||| ||||| |||||| ||   |||| | || |    
T  13812872 aaaccgtgaccctagacctctctctactgatttacatcttcacagttttatccttcttcgtcgttactttttacttggttaccgaaactattctactact 13812773  T
Q  214 tattcatctaaacaataaat-aatattaattagtttggaacttcttaattaatttttgtggacacgataatcttttatact 293  Q
    | ||| |||||| ||||||| ||| ||||||||||| | |||| ||||||||  | |||||| ||||||||||||||||||    
T  13812772 tgttcgtctaaataataaattaatcttaattagtttagtacttgttaattaacctctgtggatacgataatcttttatact 13812692  T

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Target: scaffold0596 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 341
Target Start/End: Complemental strand, 3925 - 3728
Alignment:
Q  145 ttacatcttcgagtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatatttattcatctaaacaataaat-aatattaatt 243  Q
    |||||||||||  |||||||  |||||| |||||||||| |  || ||||| |||  ||||| | || || ||| |||||| ||||||| ||| ||||||    
T  3925 ttacatcttcgcatttttatccttcttcgtcattactttttctttggttactaaaaccattctattacttgttcgtctaaataataaattaatcttaatt 3826  T
Q  244 agtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaagtgtatttttagtgcaaca 341  Q
    ||||||| |||| | |||||||   |||||| |||||||||||||||||| ||  || ||||||| ||||||| | ||||||| ||||||| ||||||    
T  3825 agtttggtacttgtaaattaatccctgtggatacgataatcttttatactacttctgcgatagagtacacttgctataagtgtgtttttagcgcaaca 3728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 342
Target Start/End: Original strand, 31962535 - 31962764
Alignment:
Q  114 aaaccgtgattctagacctatcttcattggtttacatcttcgagtttttattattcttcatcattactttctacttagttaccaaagtcattcaaatatt 213  Q
    |||||||||  ||||| || |||  |||| ||||||||||||   ||||||  |||||| || ||||||| ||||| |||||| ||   |||| | || |    
T  31962535 aaaccgtgaccctagaactctctctattgatttacatcttcgcacttttatccttcttcgtcgttactttttacttggttaccgaaactattctactact 31962634  T
Q  214 tattcatctaaacaataaat-aatattaattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcaca 312  Q
    | ||| |||||| ||||||| ||| ||||||||||| | ||||  ||||||||   |||||| |||||||||||||||||| ||  || ||||||| |||    
T  31962635 tgttcgtctaaataataaattaatcttaattagtttagtacttgctaattaatccctgtggatacgataatcttttatactacttctgcgatagagtaca 31962734  T
Q  313 cttgatctaagtgtatttttagtgcaacaa 342  Q
    |||| ||||||||| ||||||| |||||||    
T  31962735 cttgctctaagtgtgtttttagcgcaacaa 31962764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 342
Target Start/End: Original strand, 3992 - 4115
Alignment:
Q  220 tctaaacaataaat-aatattaattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgat 318  Q
    |||||| ||||||| ||| ||||||||||||| || | |||| ||||   |||||| |||||||||||||||||| ||  || ||||||| ||||||| |    
T  3992 tctaaataataaattaatcttaattagtttggtacgtgttaaataatccatgtggatacgataatcttttatactacttctgcgatagagtacacttgct 4091  T
Q  319 ctaagtgtatttttagtgcaacaa 342  Q
    |||||||| ||||||| |||||||    
T  4092 ctaagtgtgtttttagcgcaacaa 4115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 48180086 - 48179969
Alignment:
Q  227 aataaataatattaattagtttggaacttcttaattaatttttgtggacacgataatcttttatacttctcttgtgatagagcacacttgatctaagtgt 326  Q
    |||||||||| ||||||||||||  | || |||||||||   |||||| |||||||||||||||||| || || |||||||| ||||||  | ||||| |    
T  48180086 aataaataatcttaattagtttgatatttgttaattaatcaatgtggatacgataatcttttatactacttttatgatagagtacacttactgtaagttt 48179987  T
Q  327 atttttagtgcaacaata 344  Q
     ||||| | |||||||||    
T  48179986 cttttttgggcaacaata 48179969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 48180324 - 48180231
Alignment:
Q  17 tgttaattgaggaaaaataatattagtctcgaattaccaa-catgttaatagttttagtaagaggattaattattgaat-aaaataaaggaatt 108  Q
    |||||||| |||||||| || |||| || | ||| ||||| ||| ||||||||||||||||  ||||| || ||||||| ||||||||||||||    
T  48180324 tgttaattcaggaaaaagaagattaatcacaaataaccaaacatattaatagttttagtaaagggattgatgattgaataaaaataaaggaatt 48180231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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