View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2589_low_20 (Length: 217)
Name: NF2589_low_20
Description: NF2589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2589_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 25516972 - 25517166
Alignment:
| Q |
1 |
tgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccatgaaactagtagtcctttggctttgaggattcga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25516972 |
tgtcccttttcttcttatggctgagtgtgttgccaaagagctaaaggaaactaagttaaggacccatgaaactagaagtcctttggctttgaggattcga |
25517071 |
T |
|
| Q |
101 |
gtgctcgcaacaaatgcaactctaggagctgttttttataatggtaaatatgatagatggaataggtaacattcctcagtgaaattggttgctgat |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
25517072 |
gtgctcgcaacaaatgcaactctaggagctgtttttt-taatggtaaatatgatagatggaataggtaacgttcctcagtgaaattggctgctgat |
25517166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 25525122 - 25524930
Alignment:
| Q |
1 |
tgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccat-gaaactagtagtcctttggctttgaggattcg |
99 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||| |||| | |
|
|
| T |
25525122 |
tgtcccttttcttcatatgactgagtgtgttgccaaagagctaaaggaaactaagttaaatctccaacgaagctagtagtcctttggctttgacgatttg |
25525023 |
T |
|
| Q |
100 |
agtgctcgcaacaaatgcaactctaggagctgttttttataatggtaaatatgatagatggaataggtaacattcctcagtgaaattggttgctgatgc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
25525022 |
agtgctcgcaacaaatgcaactctaggagccgtttttt------tttaatatgatagatggaacaggtaacattcctcagtgaaattggttgatgatgc |
25524930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 25540590 - 25540465
Alignment:
| Q |
73 |
tagtagtcctttggctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttttttataatggtaaatatgatagatggaataggtaacat |
172 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| | ||||| | |
|
|
| T |
25540590 |
tagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgt |
25540491 |
T |
|
| Q |
173 |
tcctcagtgaaattggttgctgatgc |
198 |
Q |
| |
|
|||||||||||||||||| ||||||| |
|
|
| T |
25540490 |
tcctcagtgaaattggttactgatgc |
25540465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 25537646 - 25537546
Alignment:
| Q |
1 |
tgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccatgaaactagtagtcctttggctttgaggattcga |
100 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||||| |||| |||| |||||||| | ||| |||| | ||||||||| ||||||||||||||| |
|
|
| T |
25537646 |
tgtccctttccttcatatgaatgagtgtgttgccaaagagataaatgaaattaagttaaagccccttgaagttgctagtccttttgctttgaggattcga |
25537547 |
T |
|
| Q |
101 |
g |
101 |
Q |
| |
|
| |
|
|
| T |
25537546 |
g |
25537546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 44461144 - 44461014
Alignment:
| Q |
5 |
ccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccatgaaactagtagtcctttggctttgaggattcgagtgc |
104 |
Q |
| |
|
|||||||||| |||||||||||||||||| || ||| | |||||| ||||||||| | | | |||| || ||||||||||| |||||| |||||| |
|
|
| T |
44461144 |
ccttttcttcatatggctgagtgtgttgcaaaggagcttaaggaagctaagttaaagccacttgaagctggtagtcctttg------aggattggagtgc |
44461051 |
T |
|
| Q |
105 |
tcgcaacaaatgcaactctaggagctgttttttataa |
141 |
Q |
| |
|
| ||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
44461050 |
ttgcaacaaatgcaactctagcagctggtttttataa |
44461014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University