View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2589_low_4 (Length: 354)
Name: NF2589_low_4
Description: NF2589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2589_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 25410199 - 25409864
Alignment:
| Q |
5 |
gagagagaagaagagttccatagaacgagaaaccttattgatatcaacttaccactgatttgtttttacatagtattatgttcgacattcattaaacatt |
104 |
Q |
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| T |
25410199 |
gagagagaagaagagttccatagaatgagaaaccttattgatatcaacttaccactgatttgtttttacatagtattatgttagacattcattaaacatt |
25410100 |
T |
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| Q |
105 |
gctgtaggaggagaggcagaggcctagaaggccaaaactgacct-gagttttgtggtagttacactttttattaattaattgtgtgttgttagtaagaat |
203 |
Q |
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| T |
25410099 |
gctgtaggaggagaggcagaggcctagaaggccaaaaatgaccttgagttttgtggtagttacactttttattaattaattgtgtgttgttagtaagaat |
25410000 |
T |
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| Q |
204 |
aaataggaaaaaggcaagtcataattggttgtctagaagttattgagtggttattggatgggagagaaccaagctctcaaatcttggtaggaaccatgtc |
303 |
Q |
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| T |
25409999 |
aaataggaaaaaggcaagtcataattggttgtctagaagttattgagtggttattggatgggagagaaccaagctctcaaatcttggtaggaaccatgtc |
25409900 |
T |
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| Q |
304 |
ctgtgtctttgttctacatcttatttcctttataat |
339 |
Q |
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| T |
25409899 |
ctgtgtctttgttctacatcttatttcctttttaat |
25409864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 5115864 - 5115792
Alignment:
| Q |
197 |
taagaataaataggaaaaaggcaagtcataattggttgtctagaagttattgagtggttattggatgggagag |
269 |
Q |
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| T |
5115864 |
taagaataaatagggaaagggccaggcatagtgggttatctagaaggtattgagttgttattgggtgggagag |
5115792 |
T |
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