View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2589_low_5 (Length: 352)
Name: NF2589_low_5
Description: NF2589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2589_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 336
Target Start/End: Complemental strand, 37698274 - 37697946
Alignment:
| Q |
9 |
gaaatgaaggaagagcatcctatgctgtaaatgaatgcacaagaacatggcatgatgaaattgtcgtttatagtagaacaaacaacatgctgcagaggtt |
108 |
Q |
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| T |
37698274 |
gaaaagaaggaagagcatcctatgctgtaaatgaatgcacaagaacatggcatgatgaaattgtcgtttatagtagaacaaacaacatgctgcagaggtt |
37698175 |
T |
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| Q |
109 |
tcaaaagaaaaaacatgctgctcagaaagtnnnnnnn-ggtgatttttatacgctccttcatgttagatgtaactctttattcagcatcctgaaagcaac |
207 |
Q |
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| T |
37698174 |
tcaaaagaaaaaacatgctgctcagaaagtaaaaaaaaggtgatttttatacgctccatcatgttagatgtaactctttattcagcatcctgaaagcaac |
37698075 |
T |
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| Q |
208 |
aggtaactcctcactcaaatggatcaatgtgtacaaactctctacctttcctaaaagtaaattagttcatctcaccactaaatcatctannnnnnnatat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37698074 |
aggtaactcctcactcaaatggatcaatgtgtacaaactctctacctttcctaaaagtaaattagttcatctcaccactaaatcatctatttttttatat |
37697975 |
T |
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| Q |
308 |
gcctatatatatgtcccaacagcaacaag |
336 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
37697974 |
gcctatatatatgtcccaacagcaacaag |
37697946 |
T |
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