View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2589_low_6 (Length: 345)
Name: NF2589_low_6
Description: NF2589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2589_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 42393196 - 42392880
Alignment:
| Q |
12 |
agagaaatatggtatcattctcaaaaagaagacacctttgcttgccatacctacaccacgactgtccaatccagatctttataaatagatttgggtacta |
111 |
Q |
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| T |
42393196 |
agagaaatatggtatcattctcaaaaagaagacacctttgcttgccatacctacaccacgactgtccaatccagatctttataaatagatttggatacta |
42393097 |
T |
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| Q |
112 |
tattcactcttcatattacaatatagggtaattgatagggagagaaagtgtcgtgtgtattctatgattgttgatgcttgaaaattgttcaaaacctcaa |
211 |
Q |
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| T |
42393096 |
tattcactattcatattaccatatagggtaattgatagggagggaaagtgtcgtgtgtattctatgattgttgatgcttgaaaattgttcaaaacttcaa |
42392997 |
T |
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| Q |
212 |
tattgttaagaatagcaattcaatgagcttctacttacggagagcaccatttatcattgctggagtttttaacaattttcaagtatttgtctgacataca |
311 |
Q |
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| T |
42392996 |
tgttgttaagaatagcaattcaacgagcttctacttacggagagcaccattgatcattgctagagtttttaacaattttcaagtatttgtctaacataca |
42392897 |
T |
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| Q |
312 |
ccatatgagacacttct |
328 |
Q |
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| T |
42392896 |
ccatatgagacacttct |
42392880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 42376643 - 42376447
Alignment:
| Q |
13 |
gagaaatatggtatcattctcaaaaagaagacacctttgcttgccatacctacaccacgactgtccaatccagatctttataaatagatttgggtactat |
112 |
Q |
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| T |
42376643 |
gagaaatttggtattgttctaaaaaagaagacacctctgcttgccatacccacaccacgactgtcaaatccagatctttataaatagaatcgaatattat |
42376544 |
T |
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| Q |
113 |
attcactcttcatattacaatatagggtaattgatagggagagaaagtgtcgtgtgtattctatgattgttgatgcttg-aaaattgttcaaaacctcaa |
211 |
Q |
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| T |
42376543 |
attcactattcatattatcatata-agcaattggtaggttgggaaagt---gtgtgtattctacgattgttgatgcttgtaaaattgttcaaaacttcaa |
42376448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 42387041 - 42386957
Alignment:
| Q |
11 |
cagagaaatatggtatcattctcaaaaagaagacacctttgcttgccatacctacaccacgactgtccaatccagatctttataa |
95 |
Q |
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||||||||| ||||||| |||| ||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||| |
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| T |
42387041 |
cagagaaatttggtatcgttctaaaaaagaagacgcctttgcttgccatacccacaacacgactgtctaatccagatctttataa |
42386957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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