View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2589_low_7 (Length: 320)

Name: NF2589_low_7
Description: NF2589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2589_low_7
NF2589_low_7
[»] chr1 (1 HSPs)
chr1 (20-312)||(24110347-24110640)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 24110640 - 24110347
Alignment:
Q  20 cataggtacaatgatgcaattttgtagtaaatgatagaattgatgatgtttggcaaatgtcatacgtacaaacaaagaaacaaatcattcaagtggagag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24110640 cataggtacaatgatgcaattttgtagtaaatgatagaattgatgatgtttggcaaatgtcatacgtacaaacaaagaaacaaatcattcaagtggagag 24110541  T
Q  120 aagaggataaaagagactttgaacaaaggaagggtttgtggcaacaagaatgagtggtgagtaaaaaatagccgttcaaagaagggagtggac-nnnnnn 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  24110540 aagaggataaaagagactttgaacaaaggaagggtttgtggcaacaagaatgagtggtgagtaaaaaatagccgttcaaagaagggagtggacaaaaaaa 24110441  T
Q  219 ntgctggcctaaaaagggcttgtttggtttggtggttcatgtacgattaagattttgtttgtgtatgacatttggtgttaaatggtttcatctc 312  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24110440 atgctggcctaaaaagggcttgtttggtttggtggttcatgtacgattaagattttgtttgtgtatgacatttggtgttaaatggtttcatctc 24110347  T

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