View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2589_low_8 (Length: 319)

Name: NF2589_low_8
Description: NF2589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2589_low_8
NF2589_low_8
[»] chr3 (18 HSPs)
chr3 (18-308)||(23470709-23470999)
chr3 (48-308)||(23438239-23438499)
chr3 (22-308)||(23402996-23403282)
chr3 (54-308)||(23381878-23382123)
chr3 (22-177)||(23461585-23461737)
chr3 (192-308)||(23461773-23461886)
chr3 (196-308)||(23350452-23350564)
chr3 (192-301)||(23400712-23400821)
chr3 (192-286)||(23497482-23497576)
chr3 (192-308)||(23452665-23452781)
chr3 (194-286)||(23433875-23433967)
chr3 (192-250)||(23445808-23445866)
chr3 (22-115)||(23400493-23400583)
chr3 (239-298)||(23427143-23427202)
chr3 (216-295)||(23467249-23467328)
chr3 (54-115)||(23476856-23476917)
chr3 (54-94)||(23350322-23350362)
chr3 (192-236)||(23477060-23477104)
[»] scaffold0201 (3 HSPs)
scaffold0201 (192-308)||(9945-10058)
scaffold0201 (127-177)||(9859-9909)
scaffold0201 (52-86)||(9823-9857)
[»] chr8 (1 HSPs)
chr8 (58-143)||(15043094-15043179)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 23470709 - 23470999
Alignment:
Q  18 taacagaaggttgttcctctactttgtaagaataagaaggttgttcctgatcatcttcattttcattgttatagcttctgccttcacctccaattgctat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23470709 taacagaaggttgttcctctactttgtaagaataagaaggttgttcctgatcatcttcattttcattgttatagcttctgccttcacctccaattgctat 23470808  T
Q  118 agacacataagagtcttgagcaatggattttaacttaccaatttccttactaatgctactaccccaatattcccatacaggtaagaccccacaccccttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23470809 agacacataagagtcttgagcaatggattttaacttaccaatttccttactaatgctactaccccaatattcccatacaggtaagaccccacaccccttt 23470908  T
Q  218 atcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatcataacttccattttctt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23470909 atcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatcataacttccattttctt 23470999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 48 - 308
Target Start/End: Original strand, 23438239 - 23438499
Alignment:
Q  48 aataagaaggttgttcctgatcatcttcattttcattgttatagcttctgccttcacctccaattgctatagacacataagagtcttgagcaatggattt 147  Q
    |||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  23438239 aataagaaggttgttcctaaccatcttcagtttcattgttatagcttctgccttcacctctaattgctatagacacatcagagtcttgagcaatggattt 23438338  T
Q  148 taacttaccaatttccttactaatgctactaccccaatattcccatacaggtaagaccccacacccctttatcccctcctttgaccaccgtaattcttca 247  Q
    ||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  23438339 taatttaccaatttaattactaatgctactaccccaatattcccatacaggtaagaccccacacccctttatcccctcctttgaccaccacaattcttca 23438438  T
Q  248 ttgggaccttgaagtatgaattgaaatgataagttgcaaatatcataacttccattttctt 308  Q
    |||||| ||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  23438439 ttgggatcttgatgtatgaattgaaatgataagttgtaaatatcattacttccattttctt 23438499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 22 - 308
Target Start/End: Original strand, 23402996 - 23403282
Alignment:
Q  22 agaaggttgttcctctactttgtaagaataagaaggttgttcctgatcatcttcattttcattgttatagcttctgccttcacctccaattgctatagac 121  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  23402996 agaaggttgttcctcttctttgtgagaataagaaggttgttcctggtcatattcattttcattgtttgagcttcttccttcacctccaattgctatagac 23403095  T
Q  122 acataagagtcttgagcaatggattttaacttaccaatttccttactaatgctactaccccaatat---tcccatacaggtaagaccccacaccccttta 218  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |  ||||   | || |||||| |||||||||||||||||||    
T  23403096 acatcagagtcttgagcaatggattttaatttaccaatttccttactaatgcaactactcatatataccttccttacagggaagaccccacaccccttta 23403195  T
Q  219 tcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatcataacttccattttctt 308  Q
    |||||||  |||||||||  | |||||||||||||||||||||||||||||||||||||||||| ||   ||||||||||||| ||||||    
T  23403196 tcccctctgttgaccaccacagttcttcattgggaccttgaagtatgaattgaaatgataagttaca---atcataacttccactttctt 23403282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 54 - 308
Target Start/End: Original strand, 23381878 - 23382123
Alignment:
Q  54 aaggttgttcctgatcatcttcattttcattgttatagcttctgccttcacctccaattgctatagacacataagagtcttgagcaatggattttaactt 153  Q
    ||||||||||||  ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  23381878 aaggttgttccttgtcatcttcattttcattgttggagcttctaccttcacctccaattgctatagacacatcagagtcttgagcaatggattttaattt 23381977  T
Q  154 accaatttccttactaatgctactaccccaatattcccatacaggtaagaccccacacccctttatcccctcctttgaccaccgtaattcttcattggga 253  Q
    |||||||||||||||||||||||||| |  ||||    |||| |||  |||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  23381978 accaatttccttactaatgctactactc--atat----ataccggttcgaccccacacccctttataccctccgttgaccactgtaattcttcattggga 23382071  T
Q  254 ccttgaagtatgaattgaaatgataagttgcaaatatcataacttccattttctt 308  Q
    ||||||||||||||||||||||||||||| ||   ||||||||||||| ||||||    
T  23382072 ccttgaagtatgaattgaaatgataagttaca---atcataacttccactttctt 23382123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 23461585 - 23461737
Alignment:
Q  22 agaaggttgttcctctactttgtaagaataagaaggttgttcctgatcatcttcattttcattgttatagcttctgccttcacctccaattgctatagac 121  Q
    ||||||||||||||||   ||| | ||||| |||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  23461585 agaaggttgttcctct---ttgcatgaataggaaggttgttcctggttatcttcattttcattgttagagcttctgacttcacctccaattgctatagac 23461681  T
Q  122 acataagagtcttgagcaatggattttaacttaccaatttccttactaatgctact 177  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  23461682 acatcagagtcttgagcaatggattttaatttaccaatttccttactaatgatact 23461737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 192 - 308
Target Start/End: Original strand, 23461773 - 23461886
Alignment:
Q  192 atacaggtaagaccccacacccctttatcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatc 291  Q
    ||||||||| |||||||||||| |||||||||||  |||||||||  ||||||||||||||||||||||||||||||| |||||||||||| ||   |||    
T  23461773 atacaggtatgaccccacacccttttatcccctctgttgaccaccacaattcttcattgggaccttgaagtatgaatttaaatgataagttaca---atc 23461869  T
Q  292 ataacttccattttctt 308  Q
    |||||||||| ||||||    
T  23461870 ataacttccactttctt 23461886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 23350452 - 23350564
Alignment:
Q  196 aggtaagaccccacacccctttatcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatcataa 295  Q
    ||||||||||||||||||||||||||||||  | |||||||  |||| ||| ||| ||||||||||||| ||||||||||||| ||||||||  ||||||    
T  23350452 aggtaagaccccacacccctttatcccctcagtcgaccaccacaatttttccttgtgaccttgaagtataaattgaaatgataggttgcaaaagtcataa 23350551  T
Q  296 cttccattttctt 308  Q
    |||||| ||||||    
T  23350552 cttccactttctt 23350564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 23400712 - 23400821
Alignment:
Q  192 atacaggtaagaccccacacccctttatcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatc 291  Q
    |||||||||||||||||||||  |||||||||||| |||||||||| |||  ||  ||| ||||||||||||  || ||||||||||||||||||| |||    
T  23400712 atacaggtaagaccccacaccgttttatcccctccgttgaccaccgcaatagtttcttgtgaccttgaagtagaaactgaaatgataagttgcaaaaatc 23400811  T
Q  292 ataacttcca 301  Q
    ||||||||||    
T  23400812 ataacttcca 23400821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 23497482 - 23497576
Alignment:
Q  192 atacaggtaagaccccacacccctttatcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaa 286  Q
    ||||||||||||||||||||||||||||||||||  |||||||||  ||||||||||||  | ||||| | |||||||||||||||| |||||||    
T  23497482 atacaggtaagaccccacacccctttatcccctctgttgaccaccacaattcttcattgaaatcttgatgcatgaattgaaatgataggttgcaa 23497576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 308
Target Start/End: Original strand, 23452665 - 23452781
Alignment:
Q  192 atacaggtaagaccccacacccctttatcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatc 291  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||  |||| ||| ||  |||||||||||| ||| |||||||||| ||||||||  ||    
T  23452665 atacaggtaagactccacacccctttatcccctctgttgaccaccacaattgttccttttgaccttgaagtaggaactgaaatgataggttgcaaaagtc 23452764  T
Q  292 ataacttccattttctt 308  Q
    || ||||||| ||||||    
T  23452765 atgacttccagtttctt 23452781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 23433875 - 23433967
Alignment:
Q  194 acaggtaagaccccacacccctttatcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaa 286  Q
    |||||||||| |||||||||||| ||||||||  |||||||||  |||||||||||| || ||||| | |||||||||||||||| |||||||    
T  23433875 acaggtaagatcccacaccccttgatcccctctgttgaccaccacaattcttcattgagatcttgatgcatgaattgaaatgataggttgcaa 23433967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 23445808 - 23445866
Alignment:
Q  192 atacaggtaagaccccacacccctttatcccctcctttgaccaccgtaattcttcattg 250  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||    
T  23445808 atacaggtaagaccccacacccctttatcccctccgttgaccaccacaattcttcattg 23445866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 23400493 - 23400583
Alignment:
Q  22 agaaggttgttcctctactttgtaagaataagaaggttgttcctgatcatcttcattttcattgttatagcttctgccttcacctccaattgct 115  Q
    ||||||||||||||||   ||| | ||||| |||||||||||||| | |||||||| |||||||||| |||||||| ||||||||||| |||||    
T  23400493 agaaggttgttcctct---ttgcatgaataggaaggttgttcctggttatcttcatcttcattgttagagcttctgacttcacctccacttgct 23400583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 23427143 - 23427202
Alignment:
Q  239 aattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatcataactt 298  Q
    |||| ||| ||| ||||||||||||  |||||||||||||||||||||| ||||||||||    
T  23427143 aattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataactt 23427202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 23467249 - 23467328
Alignment:
Q  216 ttatcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatcataa 295  Q
    ||||||||||  |||| ||||  |||| ||| ||| ||||||||||||  |||||||||||||||||||||| |||||||    
T  23467249 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataa 23467328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 23476856 - 23476917
Alignment:
Q  54 aaggttgttcctgatcatcttcattttcattgttatagcttctgccttcacctccaattgct 115  Q
    |||| |||| ||| ||||||||||||||| ||||  ||||| || |||||||||||||||||    
T  23476856 aaggatgtttctggtcatcttcattttcaatgttggagcttatgacttcacctccaattgct 23476917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 23350322 - 23350362
Alignment:
Q  54 aaggttgttcctgatcatcttcattttcattgttatagctt 94  Q
    |||| |||| ||||||||||||||||||||||||| |||||    
T  23350322 aaggatgtttctgatcatcttcattttcattgttagagctt 23350362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 23477060 - 23477104
Alignment:
Q  192 atacaggtaagaccccacacccctttatcccctcctttgaccacc 236  Q
    |||||||||||| ||||||||| || ||||||||| |||||||||    
T  23477060 atacaggtaagatcccacaccctttgatcccctccgttgaccacc 23477104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 192 - 308
Target Start/End: Original strand, 9945 - 10058
Alignment:
Q  192 atacaggtaagaccccacacccctttatcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatc 291  Q
    ||||||||| |||||||||||| |||||||||||  |||||||||  ||||||||||||||||||||||||||||||| |||||||||||| ||   |||    
T  9945 atacaggtatgaccccacacccttttatcccctctgttgaccaccacaattcttcattgggaccttgaagtatgaatttaaatgataagttaca---atc 10041  T
Q  292 ataacttccattttctt 308  Q
    |||||||||||||||||    
T  10042 ataacttccattttctt 10058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 9859 - 9909
Alignment:
Q  127 agagtcttgagcaatggattttaacttaccaatttccttactaatgctact 177  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  9859 agagtcttgagcaatggattttaatttaccaatttccttactaatgatact 9909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 9823 - 9857
Alignment:
Q  52 agaaggttgttcctgatcatcttcattttcattgt 86  Q
    ||||||||||||||| |||||||||||||||||||    
T  9823 agaaggttgttcctgctcatcttcattttcattgt 9857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 15043094 - 15043179
Alignment:
Q  58 ttgttcctgatcatcttcattttcattgttatagcttctgccttcacctccaattgctatagacacataagagtcttgagcaatgg 143  Q
    ||||||||  ||||||||||||||||||||  ||||||| |||||||||||||||| |||| |||||  |||||||||||||||||    
T  15043094 ttgttccttgtcatcttcattttcattgttggagcttctaccttcacctccaattgatatatacacagtagagtcttgagcaatgg 15043179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University