View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2591_high_10 (Length: 299)
Name: NF2591_high_10
Description: NF2591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2591_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 14340962 - 14340693
Alignment:
| Q |
18 |
aaacacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttcttgtgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14340962 |
aaacacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttcttgtgt |
14340863 |
T |
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| Q |
118 |
ggataaaagaagtaataatagggtatacatccaataggacctgtattgtgaatccaaaacactcttgctccatgattgtataatctctaaaccataggaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14340862 |
ggataaaagaagtaataatagggtatacatccaataggacctgtattgtgaatccaaaacactcttgctccttgattgtataatctctaaaccataggaa |
14340763 |
T |
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| Q |
218 |
tgacaagtattagttctataaccaaattgctatataatagttggattggatattgaaccggttatatctc |
287 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14340762 |
tgacaagtattagttctataaccaagttgctatataataattggattggatattgaaccggttatatctc |
14340693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 3602082 - 3601813
Alignment:
| Q |
18 |
aaacacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttcttgtgt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3602082 |
aaacacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttctcgttcttgtgt |
3601983 |
T |
|
| Q |
118 |
ggataaaagaagtaataatagggtatacatccaataggacctgtattgtgaatccaaaacactcttgctccatgattgtataatctctaaaccataggaa |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | | |||||||||| ||||||||||||||| |
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| T |
3601982 |
ggataaaagaagtaataatagggtatacattcaataggacctgtgttgtgaatccaaaacactcttgcctcttcattgtataatttctaaaccataggaa |
3601883 |
T |
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| Q |
218 |
tgacaagtattagttctataaccaaattgctatataatagttggattggatattgaaccggttatatctc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3601882 |
tgacaagtattagttctataaccaaattgctatataatgattggattggatattgaaccggttatatctc |
3601813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 3591140 - 3590893
Alignment:
| Q |
18 |
aaacacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttcttgtgt |
117 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||| |
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| T |
3591140 |
aaacacttggtcttttagctaccagttatattcttgagcaagcttattgtgaggtttaacacagccattggcatctaagttacccttct------tgtgt |
3591047 |
T |
|
| Q |
118 |
ggataaaagaagtaataatagggtatacatccaataggacctgtattgtgaatccaaaacactcttgctccatgattgtataatctctaaaccataggaa |
217 |
Q |
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|||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||| ||| |
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| T |
3591046 |
ggataatagaagggatga--------acatccaataggacctgtattgtgaatccaaaacactcttgccccttcattgtataatttctaaaccataagaa |
3590955 |
T |
|
| Q |
218 |
tgacaagtattagttctataaccaaattgctatataatagttggattggatattgaaccggt |
279 |
Q |
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|||||| ||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| |
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| T |
3590954 |
tgacaactattagttctataaccaaaatgctatataataattggattggagattgaaccggt |
3590893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 283
Target Start/End: Complemental strand, 3569069 - 3568817
Alignment:
| Q |
27 |
gtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttcttgtgtggataaaag |
126 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| | ||||||||||||||| || |
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| T |
3569069 |
gtcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaaaacaaccattggcatccaag------ttccccttcttgtgtggataatag |
3568976 |
T |
|
| Q |
127 |
aagtaataatagggtatacatccaataggacctgtattgtgaatccaaaacactcttgctccatgattgtataatctctaaaccataggaatgacaagta |
226 |
Q |
| |
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| || || |||||||| ||||||||||||||||||||||||||| ||||||||||||| | | |||| | |||||| || || ||||||||||| |
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| T |
3568975 |
atgttatcatagggtaagcatccaataggacctgtattgtgaatcgaaaacactcttgcccgttcgttgtgaa---tctaaaacagagtaatgacaagta |
3568879 |
T |
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| Q |
227 |
tta-----gttctataaccaaattgctatataatagttggattggatattgaaccggttata |
283 |
Q |
| |
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||| |||||| |||||||||||||||||||| |||||||||| |||| ||| |||||| |
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| T |
3568878 |
ttagttctgttctaaaaccaaattgctatataataattggattggagattgtacctgttata |
3568817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 1409485 - 1409234
Alignment:
| Q |
18 |
aaacacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttcttgtgt |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| | |||||||||||| ||||| ||||| |
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| T |
1409485 |
aaacactttgtcttttagctgcctgttatattcttgagcaagctcattgtgaggtataacacagccatagacatccaagttacccttct------tgtgt |
1409392 |
T |
|
| Q |
118 |
ggataaaagaagtaataatagggtatacatccaataggacctgtattgtgaatccaaaacactcttgctccatgattgtataatctctaaaccataggaa |
217 |
Q |
| |
|
|||||| ||| || || |||||| | |||||||| |||||| |||||||||||||||||||||||| || | |||||| | | ||||| ||||| || |
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| T |
1409391 |
ggataatagatgttattatagggcaagcatccaattggacctacattgtgaatccaaaacactcttgccccttcattgtagagttgctaaaacatagtaa |
1409292 |
T |
|
| Q |
218 |
tgacaagtattagttctataaccaaattgctatataatagttggattggatattgaac |
275 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||| || | ||||||| |
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| T |
1409291 |
tgacaagtattagttctaaaaccaaattgctatataatagtcggactgaagattgaac |
1409234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 1412529 - 1412370
Alignment:
| Q |
20 |
acacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttcttgtgtgg |
119 |
Q |
| |
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|||||||||| ||||||| | ||||| |||| ||||| | | ||| |||||||| |||||||||||||| || | ||||| ||||| || || |
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| T |
1412529 |
acacttggtcctttagcttcttgttaaattcttgagctattttgttctgaggtttcacacagccattggcgtctaggttacccttcttgtgctc------ |
1412436 |
T |
|
| Q |
120 |
ataaaagaagtaataatagggtatacatccaataggacctgtattgtgaatccaaaacactcttgc |
185 |
Q |
| |
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|||| ||||||||| |||| | |||||||| |||||||||||||| ||||| ||||||||||| |
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| T |
1412435 |
ataagagaagtaattgaagggcaagcatccaattggacctgtattgtgtatccagaacactcttgc |
1412370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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