View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2591_high_12 (Length: 248)

Name: NF2591_high_12
Description: NF2591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2591_high_12
NF2591_high_12
[»] chr4 (5 HSPs)
chr4 (12-220)||(53131978-53132186)
chr4 (214-248)||(42674100-42674134)
chr4 (214-248)||(53133549-53133583)
chr4 (219-248)||(41236042-41236071)
chr4 (216-248)||(55322967-55322999)
[»] chr5 (2 HSPs)
chr5 (216-248)||(30685647-30685679)
chr5 (214-248)||(7406243-7406277)
[»] chr7 (3 HSPs)
chr7 (214-248)||(11885452-11885486)
chr7 (216-248)||(3622283-3622315)
chr7 (216-248)||(20009676-20009708)
[»] chr8 (1 HSPs)
chr8 (216-248)||(32062349-32062381)
[»] chr6 (1 HSPs)
chr6 (216-248)||(4844488-4844520)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 53131978 - 53132186
Alignment:
Q  12 gaattgacgcaagtacagcatgtcccagactctaacacattggaaaagaataaagttaaaaattgctggaaagtttgaacaagttcatcctcacttaaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53131978 gaattgacgcaagtacagcatgtcccagactctaacacattggaaaagaataaagttaaaaattgctggaaagtttgaacaagttcatcctcacttaaaa 53132077  T
Q  112 ctaatctgtaaaataattcaagattatatatagttggaatattttgtgcaacacaaacagcattactagggaaatatttccatagtaggcagtataaaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53132078 ctaatctgtaaaataattcaagattatatatagttggaatattttgtgcaacagaaacagcattactagggaaatatttccatagtaggcagtataaaca 53132177  T
Q  212 aaagttgaa 220  Q
    |||||||||    
T  53132178 aaagttgaa 53132186  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 42674100 - 42674134
Alignment:
Q  214 agttgaatgcacaaaattttataaaatatttcttc 248  Q
    |||||||||||||||||||||||||||||||||||    
T  42674100 agttgaatgcacaaaattttataaaatatttcttc 42674134  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 53133549 - 53133583
Alignment:
Q  214 agttgaatgcacaaaattttataaaatatttcttc 248  Q
    |||||||||| ||||||||||||||||||||||||    
T  53133549 agttgaatgcgcaaaattttataaaatatttcttc 53133583  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 41236071 - 41236042
Alignment:
Q  219 aatgcacaaaattttataaaatatttcttc 248  Q
    ||||||||||||||||||||||||||||||    
T  41236071 aatgcacaaaattttataaaatatttcttc 41236042  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 55322999 - 55322967
Alignment:
Q  216 ttgaatgcacaaaattttataaaatatttcttc 248  Q
    ||||||||||||||||||| |||||||||||||    
T  55322999 ttgaatgcacaaaattttaaaaaatatttcttc 55322967  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 30685647 - 30685679
Alignment:
Q  216 ttgaatgcacaaaattttataaaatatttcttc 248  Q
    |||||||||||||||||||||||||||||||||    
T  30685647 ttgaatgcacaaaattttataaaatatttcttc 30685679  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 7406277 - 7406243
Alignment:
Q  214 agttgaatgcacaaaattttataaaatatttcttc 248  Q
    ||||||||||| |||||||||||||||||||||||    
T  7406277 agttgaatgcataaaattttataaaatatttcttc 7406243  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 11885486 - 11885452
Alignment:
Q  214 agttgaatgcacaaaattttataaaatatttcttc 248  Q
    ||||||||| |||||||||||||||||||||||||    
T  11885486 agttgaatgtacaaaattttataaaatatttcttc 11885452  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 3622283 - 3622315
Alignment:
Q  216 ttgaatgcacaaaattttataaaatatttcttc 248  Q
    ||||||||||||||||||| |||||||||||||    
T  3622283 ttgaatgcacaaaattttaaaaaatatttcttc 3622315  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 20009708 - 20009676
Alignment:
Q  216 ttgaatgcacaaaattttataaaatatttcttc 248  Q
    ||||||||||||||||||| |||||||||||||    
T  20009708 ttgaatgcacaaaattttagaaaatatttcttc 20009676  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 32062349 - 32062381
Alignment:
Q  216 ttgaatgcacaaaattttataaaatatttcttc 248  Q
    ||||||||||||||||||| |||||||||||||    
T  32062349 ttgaatgcacaaaattttaaaaaatatttcttc 32062381  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 4844488 - 4844520
Alignment:
Q  216 ttgaatgcacaaaattttataaaatatttcttc 248  Q
    ||||||||||||||||||| |||||||||||||    
T  4844488 ttgaatgcacaaaattttaaaaaatatttcttc 4844520  T

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