View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2591_high_2 (Length: 599)

Name: NF2591_high_2
Description: NF2591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2591_high_2
NF2591_high_2
[»] chr4 (13 HSPs)
chr4 (422-592)||(26861592-26861762)
chr4 (208-377)||(26860453-26860622)
chr4 (1-76)||(26860247-26860322)
chr4 (322-399)||(2824623-2824700)
chr4 (326-387)||(44074888-44074950)
chr4 (348-410)||(49607933-49607995)
chr4 (362-407)||(2766737-2766782)
chr4 (326-407)||(38690701-38690782)
chr4 (147-183)||(26860393-26860429)
chr4 (373-407)||(25104409-25104443)
chr4 (342-390)||(22525439-22525487)
chr4 (325-365)||(33038943-33038983)
chr4 (325-389)||(45847923-45847987)
[»] chr2 (11 HSPs)
chr2 (282-400)||(24202138-24202259)
chr2 (321-407)||(12183714-12183800)
chr2 (353-411)||(38790070-38790128)
chr2 (343-407)||(37592201-37592265)
chr2 (293-407)||(36755621-36755738)
chr2 (328-391)||(43684315-43684378)
chr2 (320-358)||(1232224-1232262)
chr2 (325-390)||(31149098-31149162)
chr2 (343-407)||(29090467-29090531)
chr2 (342-410)||(37886201-37886269)
chr2 (339-407)||(43027203-43027271)
[»] chr7 (11 HSPs)
chr7 (286-400)||(44662449-44662566)
chr7 (342-407)||(6548691-6548756)
chr7 (322-400)||(46195949-46196027)
chr7 (321-400)||(29357831-29357909)
chr7 (342-407)||(5228121-5228186)
chr7 (342-407)||(13295354-13295419)
chr7 (326-407)||(14707327-14707408)
chr7 (326-390)||(40011747-40011811)
chr7 (343-400)||(20013633-20013690)
chr7 (342-391)||(29132010-29132059)
chr7 (326-386)||(42887189-42887250)
[»] chr5 (2 HSPs)
chr5 (291-407)||(20191439-20191557)
chr5 (326-390)||(34729507-34729570)
[»] chr3 (14 HSPs)
chr3 (318-407)||(48717440-48717529)
chr3 (351-407)||(54964520-54964576)
chr3 (325-407)||(39739308-39739390)
chr3 (326-407)||(27394542-27394623)
chr3 (342-407)||(50271780-50271845)
chr3 (325-390)||(50381748-50381813)
chr3 (333-407)||(31435480-31435554)
chr3 (325-407)||(47864670-47864752)
chr3 (294-407)||(50676846-50676962)
chr3 (342-407)||(29645806-29645871)
chr3 (342-407)||(45431678-45431743)
chr3 (342-399)||(49429511-49429568)
chr3 (371-407)||(38414963-38414999)
chr3 (326-390)||(43897637-43897701)
[»] chr1 (8 HSPs)
chr1 (322-407)||(8310685-8310769)
chr1 (326-407)||(19424081-19424162)
chr1 (529-582)||(36016231-36016284)
chr1 (321-407)||(25299889-25299975)
chr1 (326-389)||(10790490-10790553)
chr1 (342-407)||(29332335-29332400)
chr1 (321-389)||(32635170-32635239)
chr1 (371-407)||(40209894-40209930)
[»] chr8 (5 HSPs)
chr8 (535-583)||(30998824-30998872)
chr8 (326-408)||(19957299-19957381)
chr8 (284-400)||(31220334-31220451)
chr8 (322-400)||(30659984-30660062)
chr8 (322-407)||(41375518-41375603)
[»] chr6 (5 HSPs)
chr6 (325-407)||(29321955-29322037)
chr6 (324-390)||(34368194-34368260)
chr6 (342-407)||(5641669-5641734)
chr6 (360-407)||(3219145-3219192)
chr6 (371-407)||(7164774-7164810)
[»] scaffold0262 (1 HSPs)
scaffold0262 (303-389)||(2550-2639)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 8e-75; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 422 - 592
Target Start/End: Original strand, 26861592 - 26861762
Alignment:
Q  422 ctaaacagataactttaggaaagctgcctaaacataagaaaaatgatctcacacacgtttaggaggcaccactataaaaccaaccggtttgaaataacgt 521  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  26861592 ctaaacaaataactttaggaaagctgcctaaacataagaaaaatgatctcacacatgtttaggaggcaccactatgaaaccaaccggtttgaaataacgt 26861691  T
Q  522 gtcaaaggtgcccaaaaaagtcgcatgaaaggaatagatgatcaacatcctccatcttgccagaataatct 592  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  26861692 gtcaaaggtgctcaaaaaagtcgcatgaaaggaatagatgatcgacatcctccatcttaccacaataatct 26861762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 208 - 377
Target Start/End: Original strand, 26860453 - 26860622
Alignment:
Q  208 gttaagtaggcatgtgaatggaaattcaaattgaattttcacacatgcaagtcaagttagattaaaaactaaacagatagtccctgtgagattaactcac 307  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||    
T  26860453 gttaagtaggcatgtgaatagaaattcaaattgaattttcacgcatgcaagtcaagctagattaaaaactaaatagacagttcctgtgagattaactcac 26860552  T
Q  308 ttggtaaatgatacattatatatgcagggattgaggttcgaatcccggacatcccactattttaccttta 377  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  26860553 ttggtaaaagatacattatatatgcagggattggggttcgaatcccgaacaccccactattttaccttta 26860622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 26860247 - 26860322
Alignment:
Q  1 taaactggcgaaagtgcccgcgcaataagaatagaacaacagtggcaaaccaatgtcaagtgtaattgtggagtgt 76  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  26860247 taaactggcggaagtgcccgcgcaataagaatggaacaacagtggcaaacccatgtcaagtgtaattgtggagtgt 26860322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 399
Target Start/End: Original strand, 2824623 - 2824700
Alignment:
Q  322 attatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgcta 399  Q
    |||||||||| |||| | |  |||||||  |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  2824623 attatatatgtaggggtcggagttcgaactccggacatcccactatttcacctttaaggtgaatttctccagccgcta 2824700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 44074888 - 44074950
Alignment:
Q  326 tatatgcagggattgaggttcgaatcccggacatcccactattttacctt-taaggtgaattt 387  Q
    |||||||||||||||| |||||||||||||||| ||||||  || ||||| ||||||||||||    
T  44074888 tatatgcagggattgaagttcgaatcccggacaccccacttattcaccttataaggtgaattt 44074950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 410
Target Start/End: Original strand, 49607933 - 49607995
Alignment:
Q  348 aatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactttac 410  Q
    |||||| |||| ||||||  |||||||||||||||||||||||  ||| ||||||||||||||    
T  49607933 aatcccagacaccccacttatttacctttaaggtgaatttctctagccactagactactttac 49607995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 2766782 - 2766737
Alignment:
Q  362 cactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||||    
T  2766782 cactatttcacctttaaggtgaatttctccagccgctaggctactt 2766737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 326 - 407
Target Start/End: Original strand, 38690701 - 38690782
Alignment:
Q  326 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||||||| | | |||||||| |||||||| ||||||  ||  |||||||||||||||||||  |||||||| ||||||    
T  38690701 tatatgcaggggtcggggttcgaaccccggacaccccacttattctcctttaaggtgaatttctctagccgctaggctactt 38690782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 26860393 - 26860429
Alignment:
Q  147 tttttgtaattgtaattgtaacctttatttgcttata 183  Q
    ||||||||||||||| |||||||||||||||||||||    
T  26860393 tttttgtaattgtaaatgtaacctttatttgcttata 26860429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 25104409 - 25104443
Alignment:
Q  373 ctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||||||||||||||||||| |||||||||||    
T  25104409 ctttaaggtgaatttctccggccactagactactt 25104443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 22525439 - 22525487
Alignment:
Q  342 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 390  Q
    ||||||||||||||||| ||||||  || ||||||||| ||||||||||    
T  22525439 ggttcgaatcccggacaccccacttattcacctttaagatgaatttctc 22525487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 365
Target Start/End: Complemental strand, 33038983 - 33038943
Alignment:
Q  325 atatatgcagggattgaggttcgaatcccggacatcccact 365  Q
    |||||||||||||||| |||||||| | |||||||||||||    
T  33038983 atatatgcagggattggggttcgaacctcggacatcccact 33038943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 45847987 - 45847923
Alignment:
Q  325 atatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttct 389  Q
    |||| ||||||||| | |||||||| |||||||| ||||||  || | |||||||||||||||||    
T  45847987 atatgtgcagggatcggggttcgaaccccggacaccccacttattcatctttaaggtgaatttct 45847923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 282 - 400
Target Start/End: Original strand, 24202138 - 24202259
Alignment:
Q  282 agatagtccctgtgagattaactcacttggtaaatgata---cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaa 378  Q
    |||||||||| ||||| ||| ||||||||||||  ||||   |||||| |||||||||   | |||||||| |||||||| |||||||||| ||||||||    
T  24202138 agatagtccccgtgagcttagctcacttggtaagggataatgcattatgtatgcaggggccggggttcgaaccccggacaccccactatttcacctttaa 24202237  T
Q  379 ggtgaatttctccggccgctag 400  Q
    ||||||||||||| ||||||||    
T  24202238 ggtgaatttctccagccgctag 24202259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 321 - 407
Target Start/End: Complemental strand, 12183800 - 12183714
Alignment:
Q  321 cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||||| ||||||||| | | | ||||||  || ||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  12183800 cattatgtatgcaggggtcgggattcgaactccagacatcccactattttacctttaaggtgaatttctccgatcgctagactactt 12183714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 353 - 411
Target Start/End: Complemental strand, 38790128 - 38790070
Alignment:
Q  353 cggacatcccactattttacctttaaggtgaatttctccggccgctagactactttacc 411  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  38790128 cggacaccccactatttcacctttaagatgaatttctccggccgctagactactttacc 38790070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 37592265 - 37592201
Alignment:
Q  343 gttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||| ||| |||| ||||||  |||||||||||||||||||||||  |||||||||||||||    
T  37592265 gttcgaaccccagacaccccacttatttacctttaaggtgaatttctctagccgctagactactt 37592201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 293 - 407
Target Start/End: Original strand, 36755621 - 36755738
Alignment:
Q  293 gtgagattaactcacttggtaaatgatac---attatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttct 389  Q
    ||||| ||||||||||||||||  ||||    |||||||||  |||| | | |||| ||| |||||||| || ||||||| ||||||||||||| |||||    
T  36755621 gtgagcttaactcacttggtaagggataatggattatatatataggggtcggggtttgaaccccggacacccaactatttcacctttaaggtgactttct 36755720  T
Q  390 ccggccgctagactactt 407  Q
    |||| |||||| ||||||    
T  36755721 ccggtcgctaggctactt 36755738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 391
Target Start/End: Original strand, 43684315 - 43684378
Alignment:
Q  328 tatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctcc 391  Q
    |||||||||  ||||||||||| |||| ||| ||||||  || |||||||||||||||||||||    
T  43684315 tatgcaggggctgaggttcgaaccccgaacaccccacttattcacctttaaggtgaatttctcc 43684378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 1232224 - 1232262
Alignment:
Q  320 acattatatatgcagggattgaggttcgaatcccggaca 358  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  1232224 acattttatatgcaggggttgaggttcgaatcccggaca 1232262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 31149162 - 31149098
Alignment:
Q  325 atatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 390  Q
    |||| ||||||| |||||||||||| ||| |||| |||||| ||| | ||||||||||||||||||    
T  31149162 atatgtgcaggg-ttgaggttcgaaccccagacaccccactttttaatctttaaggtgaatttctc 31149098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 29090467 - 29090531
Alignment:
Q  343 gttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||| |||||||| | ||||  || | ||||||||||||||||||| |||||||| ||||||    
T  29090467 gttcgaaccccggacacctcacttattcatctttaaggtgaatttctccagccgctaggctactt 29090531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 37886269 - 37886201
Alignment:
Q  342 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactttac 410  Q
    |||||||| || ||||| ||||||  || ||||||||||||||||||||   ||| |||||||||||||    
T  37886269 ggttcgaaccctggacaccccacttattcacctttaaggtgaatttctctaaccgttagactactttac 37886201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 407
Target Start/End: Original strand, 43027203 - 43027271
Alignment:
Q  339 tgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||||||| ||| |||| |||| |  || ||||||||||||||||||||  ||| |||||||||||    
T  43027203 tgaggttcgaaccccagacaccccatttattcacctttaaggtgaatttctctagccactagactactt 43027271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 286 - 400
Target Start/End: Complemental strand, 44662566 - 44662449
Alignment:
Q  286 agtccctgtgagattaactcacttggtaaatgata---cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtg 382  Q
    |||||||||||| ||| |||||| |||||  ||||   |||||| |||||||||   | |||||||| |||||||| |||||||||| ||||||||||||    
T  44662566 agtccctgtgagcttagctcactaggtaagggataatgcattatgtatgcaggggccggggttcgaaccccggacaccccactatttcacctttaaggtg 44662467  T
Q  383 aatttctccggccgctag 400  Q
    ||||||||| ||||||||    
T  44662466 aatttctccagccgctag 44662449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 342 - 407
Target Start/End: Complemental strand, 6548756 - 6548691
Alignment:
Q  342 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||||  ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  6548756 ggttcgaactccggacaccccactatttcacctttaaggtgaatttctccggccgctaggctactt 6548691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 322 - 400
Target Start/End: Original strand, 46195949 - 46196027
Alignment:
Q  322 attatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctag 400  Q
    ||||| ||||||||| | | |||| ||| |||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  46195949 attatgtatgcaggggtcggggtttgaaccccggacaccccactatttcacctttaaggtgaatttctccagccgctag 46196027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 321 - 400
Target Start/End: Original strand, 29357831 - 29357909
Alignment:
Q  321 cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctag 400  Q
    ||||||||||||||||   ||| |||||| || |||||  ||||||||| ||||||||||||||||||| ||||||||||    
T  29357831 cattatatatgcagggccggag-ttcgaaccctggacactccactatttcacctttaaggtgaatttcttcggccgctag 29357909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 5228121 - 5228186
Alignment:
Q  342 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||||||| ||||| ||||||  || ||||||||||||||||||||  |||||||| ||||||    
T  5228121 ggttcgaatcctggacaccccacttattcacctttaaggtgaatttctctagccgctaggctactt 5228186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 407
Target Start/End: Complemental strand, 13295419 - 13295354
Alignment:
Q  342 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||||||| | |||| ||| || ||||| ||||||||||||||||||||| |||||||| ||||||    
T  13295419 ggttcgaacctcggatatctcattatttcacctttaaggtgaatttctccagccgctaggctactt 13295354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 326 - 407
Target Start/End: Original strand, 14707327 - 14707408
Alignment:
Q  326 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||||||| ||| |||||||| |||||||| ||||||  || |||||||  |||||||||||  |||| ||||||||||    
T  14707327 tatatgcaggggttggggttcgaaccccggacaccccacttattcacctttatagtgaatttctctagccgttagactactt 14707408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 40011747 - 40011811
Alignment:
Q  326 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 390  Q
    ||||||||||| | |||||||||| |||| ||||||||||  ||||| ||||| |||||||||||    
T  40011747 tatatgcaggggtcgaggttcgaaccccgaacatcccacttatttacttttaaagtgaatttctc 40011811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 20013633 - 20013690
Alignment:
Q  343 gttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctag 400  Q
    |||||||||||||||||||||||  |  ||||||||| ||||||||||  ||||||||    
T  20013633 gttcgaatcccggacatcccacttatccacctttaagatgaatttctctagccgctag 20013690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 29132059 - 29132010
Alignment:
Q  342 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctcc 391  Q
    |||| ||| ||| |||| |||||||||||| |||||||||||||||||||    
T  29132059 ggtttgaaccccagacaccccactattttatctttaaggtgaatttctcc 29132010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 42887189 - 42887250
Alignment:
Q  326 tatatgcagggattgaggttcgaatcccggacatcccactattttacctt-taaggtgaatt 386  Q
    |||||||||||  ||||||||||| |||||||| ||||||  |||||||| |||||||||||    
T  42887189 tatatgcaggggctgaggttcgaaccccggacaccccacttatttaccttataaggtgaatt 42887250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 407
Target Start/End: Original strand, 20191439 - 20191557
Alignment:
Q  291 ctgtgagattaactcacttggtaaatgata---cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaattt 387  Q
    ||||||| ||||||||||||||||  ||||   |||| ||||||||||| | | |||||||| ||||||||  |||||  || ||||||||||| |||||    
T  20191439 ctgtgagcttaactcacttggtaagggataatgcatt-tatatgcaggggtcggggttcgaaccccggacactccacttattcacctttaaggtaaattt 20191537  T
Q  388 ctccggccgctagactactt 407  Q
    ||| |||| |||||||||||    
T  20191538 ctctggccactagactactt 20191557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 34729507 - 34729570
Alignment:
Q  326 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 390  Q
    ||||||||||| | | |||||||| |||||||| ||||||  || ||||||||||||||||||||    
T  34729507 tatatgcaggggtcggggttcgaa-cccggacaccccacttattcacctttaaggtgaatttctc 34729570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 48717440 - 48717529
Alignment:
Q  318 atacattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||||| ||||||||| | | |||||||| |||  ||| |||||| ||| | ||||||||||||||||||| ||||||| |||||||    
T  48717440 atacattatgtatgcaggggtaggggttcgaaccccaaacaccccactttttcatctttaaggtgaatttctccagccgctaaactactt 48717529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 54964576 - 54964520
Alignment:
Q  351 cccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||||||| |||||||||| |||||||||||| |||||||| |||||||| ||||||    
T  54964576 cccggacaccccactatttcacctttaaggtgtatttctccagccgctaggctactt 54964520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 407
Target Start/End: Original strand, 39739308 - 39739390
Alignment:
Q  325 atatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||| ||||||||||| |||||||| |||||||| | ||||  || | ||||||||||||||||||  ||| |||||||||||    
T  39739308 atatgtgcagggattggggttcgaaccccggacacctcacttattcatctttaaggtgaatttctctagccactagactactt 39739390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 326 - 407
Target Start/End: Original strand, 27394542 - 27394623
Alignment:
Q  326 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||||||||||  || |||| ||| |||||||| ||||||  || ||||||||||||||||||||  |||||||| ||||||    
T  27394542 tatatgcaggggctggggtttgaaccccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctactt 27394623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 50271780 - 50271845
Alignment:
Q  342 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||||||| |||| ||||||||||  || ||||||||||||||||||||   ||||||||||||||    
T  50271780 ggttcgaaccccgtacatcccacttattcacctttaaggtgaatttctctaaccgctagactactt 50271845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 50381748 - 50381813
Alignment:
Q  325 atatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 390  Q
    |||||||||||| | | ||||||||||||||||| ||||||  || | ||||||||||||||||||    
T  50381748 atatatgcaggggtcggggttcgaatcccggacaccccacttattcatctttaaggtgaatttctc 50381813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 407
Target Start/End: Complemental strand, 31435554 - 31435480
Alignment:
Q  333 agggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||| ||| |||||||| | |||||||||||||  || | ||||||||||||||||||  ||| |||||||||||    
T  31435554 aggggttggggttcgaacctcggacatcccacttattcatctttaaggtgaatttctctagccactagactactt 31435480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 407
Target Start/End: Original strand, 47864670 - 47864752
Alignment:
Q  325 atatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||| ||||||| ||| |||||||| |||||||| ||||||  || | ||||||||||||||||||  ||| |||| ||||||    
T  47864670 atatgtgcaggggttggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctactt 47864752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 50676962 - 50676846
Alignment:
Q  294 tgagattaactcacttggtaaatga---tacattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 390  Q
    |||| ||||||||||||||||  ||   |||||  |||||| |||| ||| |||||||| |||| ||| ||||||  || ||||||||||||||||||||    
T  50676962 tgagtttaactcacttggtaagggacaatacatattatatgtaggggttggggttcgaaccccgaacaccccacttattcacctttaaggtgaatttctc 50676863  T
Q  391 cggccgctagactactt 407  Q
       || |||||||||||    
T  50676862 taaccactagactactt 50676846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 407
Target Start/End: Complemental strand, 29645871 - 29645806
Alignment:
Q  342 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||||||| |||||||| ||||||  || | ||||||||||||||||||  ||| |||||||||||    
T  29645871 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactagactactt 29645806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 45431678 - 45431743
Alignment:
Q  342 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||||||| |||||||| ||||||  || |||||||||||||||||| |  |||||||| ||||||    
T  45431678 ggttcgaaccccggacaccccacttattcacctttaaggtgaatttccctagccgctaggctactt 45431743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 49429511 - 49429568
Alignment:
Q  342 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgcta 399  Q
    |||||||| |||||||| ||||||  || ||||||||||||||||||||  |||||||    
T  49429511 ggttcgaaccccggacaccccacttattcacctttaaggtgaatttctctagccgcta 49429568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 38414963 - 38414999
Alignment:
Q  371 acctttaaggtgaatttctccggccgctagactactt 407  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  38414963 acctttaaggtgaatttctctggccgctaggctactt 38414999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 43897637 - 43897701
Alignment:
Q  326 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 390  Q
    |||||| ||||||||| ||||||| | | |||| ||||||  || ||||||||||||||||||||    
T  43897637 tatatgtagggattgatgttcgaacctcagacaccccacttattcacctttaaggtgaatttctc 43897701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 322 - 407
Target Start/End: Original strand, 8310685 - 8310769
Alignment:
Q  322 attatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||||||||||| |   |||||||| |||||| | |||||||||||| |||||||||||||||||||  ||||||| ||||||    
T  8310685 attatatatgcaggggtcagggttcgaaccccggataccccactatttta-ctttaaggtgaatttctccaaccgctaggctactt 8310769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 326 - 407
Target Start/End: Original strand, 19424081 - 19424162
Alignment:
Q  326 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||||||| | | |||||||| |||||||| ||||||  || ||||||||||||||||||||  |||||||| ||||||    
T  19424081 tatatgcaggggtcggggttcgaaccccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctactt 19424162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 582
Target Start/End: Complemental strand, 36016284 - 36016231
Alignment:
Q  529 gtgcccaaaaaagtcgcatgaaaggaatagatgatcaacatcctccatcttgcc 582  Q
    |||||||||||| |||||||||||||| ||||| |||| |||||||||||||||    
T  36016284 gtgcccaaaaaaatcgcatgaaaggaagagatggtcaatatcctccatcttgcc 36016231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 407
Target Start/End: Original strand, 25299889 - 25299975
Alignment:
Q  321 cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||||||||||||||| |   |||||| | || ||||| |||||||||| ||||  ||||||||||||||| |||||||| ||||||    
T  25299889 cattatatatgcaggggtcagggttcgtaccctggacaccccactatttcacctcgaaggtgaatttctccagccgctaggctactt 25299975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 389
Target Start/End: Complemental strand, 10790553 - 10790490
Alignment:
Q  326 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttct 389  Q
    ||||||||||| ||| |||| ||| |||||||| || |||  ||||||||||||||||||||||    
T  10790553 tatatgcaggggttggggtttgaaccccggacaccctacttatttacctttaaggtgaatttct 10790490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 29332335 - 29332400
Alignment:
Q  342 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||| ||| |||||||| ||||||  || ||||||||||||||||||||  |||||||| ||||||    
T  29332335 ggtttgaaccccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctactt 29332400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 32635170 - 32635239
Alignment:
Q  321 cattatatatgcagggattgaggttcgaatcccggacatcccactattttaccttta-aggtgaatttct 389  Q
    |||||||||||||||| ||| |||||||| |||||||| ||||||  || ||||| | ||||||||||||    
T  32635170 cattatatatgcaggggttggggttcgaaccccggacaccccacttattcaccttaagaggtgaatttct 32635239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 40209930 - 40209894
Alignment:
Q  371 acctttaaggtgaatttctccggccgctagactactt 407  Q
    |||||||||||||||||||| |||| |||||||||||    
T  40209930 acctttaaggtgaatttctctggccactagactactt 40209894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 535 - 583
Target Start/End: Original strand, 30998824 - 30998872
Alignment:
Q  535 aaaaaagtcgcatgaaaggaatagatgatcaacatcctccatcttgcca 583  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  30998824 aaaaaagtcgtaggaaaggaatagatgatcaatatcctccatcttgcca 30998872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 408
Target Start/End: Complemental strand, 19957381 - 19957299
Alignment:
Q  326 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactacttt 408  Q
    |||||||||||   |||||||||| |||||||| ||||||  || ||||||||||||||||||||  || ||||| |||||||    
T  19957381 tatatgcaggggacgaggttcgaaccccggacaccccacttattcacctttaaggtgaatttctctagcagctaggctacttt 19957299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 400
Target Start/End: Original strand, 31220334 - 31220451
Alignment:
Q  284 atagtccctgtgagattaactcacttggtaaatgata---cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaagg 380  Q
    |||||||| ||||| ||| ||||||||||||  ||||   |||||||||||||||   || |||| |||||| |||||  ||||||||| || |||||||    
T  31220334 atagtccccgtgagcttagctcacttggtaagggataatgcattatatatgcaggc--tggggtttgaatcctggacactccactatttcacatttaagg 31220431  T
Q  381 tgaatttctccggccgctag 400  Q
    |||||||||  |||||||||    
T  31220432 tgaatttctttggccgctag 31220451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 400
Target Start/End: Original strand, 30659984 - 30660062
Alignment:
Q  322 attatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctag 400  Q
    ||||| ||||||||| | | ||||| || |||||||| |||||||||| ||||||||||| ||||| |||  |||||||    
T  30659984 attatgtatgcaggggtcggggttcaaaccccggacaccccactatttcacctttaaggtaaatttttccaaccgctag 30660062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 407
Target Start/End: Original strand, 41375518 - 41375603
Alignment:
Q  322 attatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||| |||| |||| ||| |||| |||  ||||||| | |||||||| |||||||| |||||||||||| || ||||| ||||||    
T  41375518 attatgtatgtaggggttggggtttgaactccggacacctcactatttcacctttaaagtgaatttctccagctgctaggctactt 41375603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 407
Target Start/End: Complemental strand, 29322037 - 29321955
Alignment:
Q  325 atatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||| |||||||  || |||||||| ||| |||||||||||  |||| ||||||||||||||||||  ||| |||||||||||    
T  29322037 atatgtgcaggggctggggttcgaaccccagacatcccacttatttatctttaaggtgaatttctctagccactagactactt 29321955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 34368194 - 34368260
Alignment:
Q  324 tatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 390  Q
    ||||||||||||| |||||||||||| |||||| |  |||||  |||||||||||| ||||||||||    
T  34368194 tatatatgcaggggttgaggttcgaaccccggatacaccacttatttacctttaagatgaatttctc 34368260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 407
Target Start/End: Complemental strand, 5641734 - 5641669
Alignment:
Q  342 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||||  ||||||| ||||||  || ||||||||||||||||||||  |||||||||||||||    
T  5641734 ggttcgaactccggacaccccacttattcacctttaaggtgaatttctctagccgctagactactt 5641669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 3219192 - 3219145
Alignment:
Q  360 cccactattttacctttaaggtgaatttctccggccgctagactactt 407  Q
    |||||||||| ||||||||| ||||||||||| ||||||| |||||||    
T  3219192 cccactatttcacctttaagatgaatttctcccgccgctaaactactt 3219145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 7164774 - 7164810
Alignment:
Q  371 acctttaaggtgaatttctccggccgctagactactt 407  Q
    ||||||||||||||||||||  |||||||||||||||    
T  7164774 acctttaaggtgaatttctctagccgctagactactt 7164810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 389
Target Start/End: Original strand, 2550 - 2639
Alignment:
Q  303 ctcacttggtaaatgata---cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttct 389  Q
    |||||||||||||| |||   ||| |||||||||| | |||||||||||||| | |||| ||||||  ||||| |||| |||||||||||    
T  2550 ctcacttggtaaataataacacataatatatgcagaggttgaggttcgaatcgcagacaccccacttatttacttttacggtgaatttct 2639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University