View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2591_high_3 (Length: 483)
Name: NF2591_high_3
Description: NF2591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2591_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 34899402 - 34899696
Alignment:
| Q |
1 |
tcatcagaaatcccaccactttcaatgtagtcctcagcaccaacagaatttgaattagcaaaaaagtcatcatcatccgtgtcagactcctcataaaaag |
100 |
Q |
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| T |
34899402 |
tcatcagaaatcccaccactttcaatgtagtcctcagcaccaacagaatttgaattagcgaaaaagtcatcatcatccgtgtcagactcctcataaaaag |
34899501 |
T |
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| Q |
101 |
aagaagactcgacgatgttattcgatataaggctatcatcaagactgtgcttacggacttgatgatgccgtttgtgtgtagacgtgtctcgtagctgttg |
200 |
Q |
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| T |
34899502 |
aagaagactcgacgatgttattcgatataaggctatcatcaagactgtgcttacggacttgatgatgccgtttgtgtgtagacgtgtctcgtagctgttg |
34899601 |
T |
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| Q |
201 |
gctatacgaatgtgttttgcgacgaggtggaacagaactcaacccggccaaagactccttctcatcgtcgtcaatatttcgatcatccatgatag |
295 |
Q |
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| T |
34899602 |
gctatacgaatgtgttttgcgacgaggtggaacagaactcaacccggccaaagactccttctcatcgtcgtcaatatttcgatcatccatgatag |
34899696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 413 - 469
Target Start/End: Original strand, 34899812 - 34899868
Alignment:
| Q |
413 |
gtctaaaggggttccctagagaggtggaagtacgtaggattgatgaccgggaagtaa |
469 |
Q |
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| T |
34899812 |
gtctaaaggggttccctagagaggtggaagtacgtaggattgatgaccgggaagtaa |
34899868 |
T |
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