View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2591_high_4 (Length: 401)
Name: NF2591_high_4
Description: NF2591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2591_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 36596615 - 36596251
Alignment:
| Q |
17 |
agttttaggtgcagatatgtcatgaaatatagactgagtttt-catatgctagcttaaatatcttattgatgcttgctgaaaaataatactccaattaca |
115 |
Q |
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| T |
36596615 |
agttttaggtgcagatatgtcatgaaatataggctgagtttttcatatgctagcttaaatatct-attgatgcttgctgaaaaataatattcctattaca |
36596517 |
T |
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| Q |
116 |
ttataaaactactttatattctcaacaaaattaatagcggtcctcgtgtgagcaaattcatttgaaaatgagatgtaatgttatatgtaagggttgagat |
215 |
Q |
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| T |
36596516 |
ttataaaactactttatattctcaacaaaattaatagcggtcctcgtgtgagcaaattcatttgacagtgagatgtaatgttatatgtaagggttgagat |
36596417 |
T |
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| Q |
216 |
tcgaaccctatacacctcaatgtactcaaaatcctgtaaaatgaaaaattgcgctttcaacttaacatataaaaacctttcatcatctaaataaaagttt |
315 |
Q |
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| T |
36596416 |
ttgaatactaaacacctcaatgtactcaaaatcctgtaaaatgaaaaattgcgctttcaacttagcatataaaaacctttcatcatctaaataaaagttt |
36596317 |
T |
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| Q |
316 |
tttataatcaagtttattctaaggttttttcgagatcactttaaaagaattgtgataacatacctaa |
382 |
Q |
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| T |
36596316 |
tttataatcaagtttattctaaggt-ttttctagatcactttaaaagaattgtgataacaaacctaa |
36596251 |
T |
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