View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2591_high_6 (Length: 363)
Name: NF2591_high_6
Description: NF2591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2591_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 44187081 - 44186746
Alignment:
| Q |
12 |
agagaattccacttatcgatttactctatcgcacttgttaattgcgatttggggtataatagtcaaattcatgacatacatgtatcttatccttcaaatt |
111 |
Q |
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| T |
44187081 |
agagaattccaattatcgatttactctatcgcacgtgttaattgcgatttggggtataatagtcaaattcatgacatacatgtatcttatccttaaaatt |
44186982 |
T |
|
| Q |
112 |
gcgcagttatcaacagataataaatttaaatcttttgtatattttatttaataaggatctacatgttctttttcaccaaatatctatcctatcatagagc |
211 |
Q |
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| T |
44186981 |
gcgcagttatcaacagataataaatttaaatcttttgtatattttatttaataaggatctacatgttctttttcaccaaatatctatcctattatagagc |
44186882 |
T |
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| Q |
212 |
atggtgtattactgtcagtacatagtatttcaaaagcttgtgcaagatgcttgaaatataaattttgaccactacaaaattttctgagcttgattgatta |
311 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44186881 |
atagtgtattactgtcagtacatagcatttcaaaagcttgtgcaagatacttgaaatataaattttgaccactacaaaattttctgagcttgattgatta |
44186782 |
T |
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| Q |
312 |
agaaatcaaataccatgtccaacccacctatacttg |
347 |
Q |
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| T |
44186781 |
agaaatcaaatagcatgtccaacccacctatacttg |
44186746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 1328224 - 1327902
Alignment:
| Q |
9 |
agcagagaattccacttatcgatttactctatcgcacttgttaattgcgatttggggtataatagtcaaattcatgacatacatgta-tcttatccttca |
107 |
Q |
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|||| ||||||||| |||||| | ||||||||| ||| ||||||||| |||||| ||| |||||||| ||| ||||||||||||||| |||||||||| | |
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| T |
1328224 |
agcaaagaattccaattatcggtctactctatcacacgtgttaattgtgatttgcggtgtaatagtctaatccatgacatacatgtactcttatccttaa |
1328125 |
T |
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| Q |
108 |
aattgcgcagttatcaacagataataaatttaaatcttttgtatattttatttaataaggatctacatgttctttttcaccaaatatctatcctatcata |
207 |
Q |
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| ||| ||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | |
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| T |
1328124 |
acttgtgcagtta-------ataataaatttaaatgttctgtttattttatttaataaggatctacatgctctttttcaccaaatatctatcctctcaca |
1328032 |
T |
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| Q |
208 |
gagcatggtgtattactgtcagtacatagtatttcaaaagcttgtgcaagatgcttgaaatataaattttgaccactacaaaattttctgagcttgattg |
307 |
Q |
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||| | |||||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||||||| ||||||||||||| |
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| T |
1328031 |
gagagtactgtattaccgtcagtacatagtatttcaaaagcttgtacaagatacttgaaatctaaattttggccactacaaaatttcctgagcttgattg |
1327932 |
T |
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| Q |
308 |
attaagaaatcaaataccatgtccaaccca |
337 |
Q |
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| T |
1327931 |
attaagaaatcaaatagcatgtacaaccca |
1327902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 4878700 - 4878655
Alignment:
| Q |
292 |
tttctgagcttgattgattaagaaatcaaataccatgtccaaccca |
337 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
4878700 |
tttctgagcttgattgattaagaaatcaaatagaatgtacaaccca |
4878655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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