View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2591_high_8 (Length: 311)

Name: NF2591_high_8
Description: NF2591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2591_high_8
NF2591_high_8
[»] chr4 (1 HSPs)
chr4 (1-294)||(26860001-26860295)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 26860295 - 26860001
Alignment:
Q  1 tttgccactgttgttccattcttattgcgcgggcacttccgccagtttaaatgctcacctccacttccttacccgccacgttgccactaagcaacactaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26860295 tttgccactgttgttccattcttattgcgcgggcacttccgccagtttaaatgctcacctccacttccttacccgccacgttgccactaagcaacactaa 26860196  T
Q  101 tttatttattttt-aaaatccaaaattactgtttactattgagaaaaataaacttaaacccaccactacattctctcactagattatttcttctcttttt 199  Q
    ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26860195 ttttttttttttttaaaatccaaaattactgtttactattgagaaaaataaacttaaacccaccactacattctctcactagattatttcttctcttttt 26860096  T
Q  200 cacctttctccttcaattcaaccactttctctctgcaactctacttgtcttcgagaagacgaaactctctcctcgtgaatcaaaagcgtcaaagc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26860095 cacctttctccttcaattcaaccactttctctctgcaactctacttgtcttcgagaagacgaaactctctcctcgtgaatcaaaagcgtcaaagc 26860001  T

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