View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2591_low_10 (Length: 344)
Name: NF2591_low_10
Description: NF2591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2591_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 53134142 - 53133809
Alignment:
| Q |
1 |
actgcattcatgagcttcttctctgtagttatagcattgttcaaggtaaatgcttctagattcnnnnnnnatgcaattgttctcaacatgaaatttttta |
100 |
Q |
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| T |
53134142 |
actgcattcatgagcttcttctctgtagttatagcattgttcaaggtaaatgcttctagattctttttttatgcaattgttctcaacatgaaatttttga |
53134043 |
T |
|
| Q |
101 |
ttcaaaatgtgtacctaatacaaacctttgtactgaatttatataggatatacctgacattgaaggagataaaatatttggcatccaatctttttcagta |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53134042 |
ttcaatatgtgtacctaatacaaacctttgtactgaatttatataggatatacctgacattgaaggagataaaatatttggcatccaatctttttcagta |
53133943 |
T |
|
| Q |
201 |
cgtttaggtcagaagcgggtatgttcttcaaatgcaacttctcaacattgttcccttttttatcccatggttgtcgctaactaatctctgacaggtattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53133942 |
cgtttaggtcagaagcgggtatgttcttcaaatgcaacttctcaacattgttcccttttttatcccatggttgtcgctaactaatctctgacaggtattt |
53133843 |
T |
|
| Q |
301 |
tggatttgtgttacccttcttgaattggcctatg |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
53133842 |
tggatttgtgttacccttcttgaattggcctatg |
53133809 |
T |
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