View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2592_high_10 (Length: 347)
Name: NF2592_high_10
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 3772888 - 3773219
Alignment:
| Q |
1 |
cgaaagaaaatataagactataatttatatctgtcctatgcaaaagcgatgatgacacggacagatgatgatgagttttttgaggtcggaggctacgaca |
100 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |
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| T |
3772888 |
cgaaagaaaatataagactgtaatttatatttgtcctatgcaaaagcgatgatgacacggaaagataatgatgagttttgtgaggtcggaggctacgaca |
3772987 |
T |
|
| Q |
101 |
gcgtaaacgttatgcaaaggcgaagacgtggttctgcgacatcttacaccaacgtttctgggtttcttgattgaattctcctcctcgctgcgtttttggg |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
3772988 |
gcgtaaacgttatgcaaaggcaaagacgtggttctgcgacatcttacaccaacgtttctggatttcttgattgaattctcctcctcgccgcgtttttggg |
3773087 |
T |
|
| Q |
201 |
ttgannnnnnnnnnnnnaatgaatatatgcattttctatttttattgg--aaaaactatcacagttaaaaaataatcaaattaaaaattcaannnnnnnc |
298 |
Q |
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|||| ||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||| | |
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| T |
3773088 |
ttgatttttttgtttttaatgaatatatgcattttctatttttactggaaaaaaaacatcacagttaaaaaataatcgaattaaaaattcaatttttttc |
3773187 |
T |
|
| Q |
299 |
cttctttacctcactgtttgttagattgaaaa |
330 |
Q |
| |
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||||||| |||||||||||||||||||||||| |
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| T |
3773188 |
cttcttttcctcactgtttgttagattgaaaa |
3773219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 44943865 - 44943581
Alignment:
| Q |
1 |
cgaaagaaaatataagactataatttatatctgtcctatgcaaaagcgatgatgacacggacagatgatgatgagttttttgaggtcggaggctacgaca |
100 |
Q |
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||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |
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| T |
44943865 |
cgaaagaaaatataagaatgtaatttatatttgtcctatgcaaaagcgatgatgacacagacagatgatgatgggttttgtgaggtcggaggctacgaca |
44943766 |
T |
|
| Q |
101 |
gcgtaaacgttatgcaaaggcgaagacgtggttctgcgacatcttacaccaacgtttctgggtttcttgattgaattctcctcctcgctgcgtttttggg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44943765 |
acgtaaacgttatgcaaaggcgaagacgtggttct----tacgtta-tgcaacgtttctgggtttcttgattgaattctcctcctcgccgcgtttttggg |
44943671 |
T |
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| Q |
201 |
ttgannnnnnnnnnnnnaatgaatatatgcattttctatttttattggaaaaactatcacagttaaaaaataatcaaattaaaaattcaa |
290 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
44943670 |
ttgatttttttgtttttaatgaatatatgcattttctacttttattggaaaaaccatcacagttaaaaaataatcgaattaaaaattcaa |
44943581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 22966976 - 22966692
Alignment:
| Q |
1 |
cgaaagaaaatataagactataatttatatctgtcctatgcaaaagcgatgatgacacggacagatgatgatgagttttttgaggtcggaggctacgaca |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |
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| T |
22966976 |
cgaaagaaaatataagaatgtaatttatatttgtcctatgcaaaagcgatgatgacacagacagatgatgatgggttttgtgaggtcggaggctacgaca |
22966877 |
T |
|
| Q |
101 |
gcgtaaacgttatgcaaaggcgaagacgtggttctgcgacatcttacaccaacgtttctgggtttcttgattgaattctcctcctcgctgcgtttttggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22966876 |
acgtaaacgttatgcaaaggcgaagacgtggttct----tacgtta-tgcaacgtttctgggtttcttgattgaattctcctcctcgccgcgtttttggg |
22966782 |
T |
|
| Q |
201 |
ttgannnnnnnnnnnnnaatgaatatatgcattttctatttttattggaaaaactatcacagttaaaaaataatcaaattaaaaattcaa |
290 |
Q |
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|||| ||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
22966781 |
ttgatttttttgtttttaatgaatatatgcattttctacttttattagaaaaaccatcacagttaaaaaataatcgaattaaaaattcaa |
22966692 |
T |
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