View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2592_high_16 (Length: 262)
Name: NF2592_high_16
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 34254287 - 34254056
Alignment:
| Q |
18 |
agtcattcgatcctaaatcaaaggtgaagactgtttaaagatgatttaattaaggtatcaaatcaatagctgagatcaattaatgcatgcagccgcgtat |
117 |
Q |
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| T |
34254287 |
agtcattcgatcctaaatcaaaggtgaagactgtttaaagatgatttaattaaggtatcaaatcaatagctgagatcaattaatgcatgcagccgcgtat |
34254188 |
T |
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| Q |
118 |
atttgtaaatgtagggaatccatatcccattaagtaatatcttcttacctgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatga |
217 |
Q |
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| T |
34254187 |
atttgtaaatgtagggaatccatatcccattaagtaatatcttcttacttgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatga |
34254088 |
T |
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| Q |
218 |
aaatccaactccaacaggagaatcaataagaa |
249 |
Q |
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| T |
34254087 |
aaatccaactccaacaggagaatcaataagaa |
34254056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 26634250 - 26634173
Alignment:
| Q |
161 |
cttacctgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacaggaga |
238 |
Q |
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| T |
26634250 |
cttacctgtcctcttatcgccattgttgagaatgtcagatgaattctttgaatatgaaaatccaactccaacaggaga |
26634173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 26626696 - 26626613
Alignment:
| Q |
162 |
ttacctgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacaggagaatcaata |
245 |
Q |
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| T |
26626696 |
ttacctgtcctcttatcgccattggtgagaatgtcagatgaattctttgaataggaaaatccaactccgacaggcgagtcaata |
26626613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 26641723 - 26641633
Alignment:
| Q |
161 |
cttacctgtcctcttatctccattgttgagaatatcagaagaagcatt------tgaatatgaaaatccaactccaacaggagaatcaata |
245 |
Q |
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| T |
26641723 |
cttacctgtcctcttatcgccattgttgagaatgtcatcagatgaattctttgttgaatatgaaaatccaactccaacaggagagtcaata |
26641633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 3332917 - 3332885
Alignment:
| Q |
206 |
atttgaatatgaaaatccaactccaacaggaga |
238 |
Q |
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| T |
3332917 |
atttgaataagaaaatccaactccaacaggaga |
3332885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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