View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2592_high_20 (Length: 237)
Name: NF2592_high_20
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_high_20 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 16874060 - 16874280
Alignment:
| Q |
1 |
atctcttttgtaaattgttgcttagctaagcatgtgtttatttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagccg |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
16874060 |
atctcttttgtaatttgttgcttagctaagcatgcgtttatttaacgtaacaattaactctttattttcttatctttccggaaaggttggaaagaagccg |
16874159 |
T |
|
| Q |
101 |
acagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaagttttcaatattgcagccattatt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | || |
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| T |
16874160 |
acagatgccatatcatatgcacataaatctttagctactggaatcagtgtatctaatatctgttatgctattggaagttttcaatattgcagccaatgtt |
16874259 |
T |
|
| Q |
201 |
catgacgtgaagcgtaagatc |
221 |
Q |
| |
|
| ||||||||||||||||||| |
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|
| T |
16874260 |
cctgacgtgaagcgtaagatc |
16874280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 16580200 - 16580420
Alignment:
| Q |
1 |
atctcttttgtaaattgttgcttagctaagcatgtgtttatttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagccg |
100 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |
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| T |
16580200 |
atctcttttgtaatttgttgctaagctaagcatgcgtttatttaacataacaattaactctttatttacttatctttccggaaaggttgaaatcaagccg |
16580299 |
T |
|
| Q |
101 |
acagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaagttttcaatattgcagccattatt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | | || |
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| T |
16580300 |
acagatgccatatcatatgcacataaatctttagctactggaatcagtgtatctaatatctgttatgctattggaagttttcaatattgcagctaatgtt |
16580399 |
T |
|
| Q |
201 |
catgacgtgaagcgtaagatc |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
16580400 |
catgacgtgaagcgtaagatc |
16580420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16615180 - 16614960
Alignment:
| Q |
1 |
atctcttttgtaaattgttgcttagctaagcatgtgtttatttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagccg |
100 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |
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| T |
16615180 |
atctcttttgtaatttgttgctaagctaagcatgcgtttatttaacataacaattaactctttatttacttatctttccggaaaggttgaaatcaagccg |
16615081 |
T |
|
| Q |
101 |
acagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaagttttcaatattgcagccattatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | | || |
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|
| T |
16615080 |
acagatgccatatcatatgcacataaatctttagctactggaatcagtgtatctaatatctgttatgctattggaagttttcaatattgcagctaatgtt |
16614981 |
T |
|
| Q |
201 |
catgacgtgaagcgtaagatc |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
16614980 |
catgacgtgaagcgtaagatc |
16614960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 16572274 - 16572434
Alignment:
| Q |
61 |
tttatttacttatctttcaggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatc |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
16572274 |
tttatttacttatctttcaggaaaggttggaaagaagccgacagatgccatatcgtatgcacataaatctttagctactggaatcagtgtatctaatatc |
16572373 |
T |
|
| Q |
161 |
tgctatgctattggaagttttcaatattgcagccattattcatgacgtgaagcgtaagatc |
221 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
16572374 |
tgatatgctattggaagttttcaatattgcagccaatattcatgacgtgaagcgtaagatc |
16572434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 16977759 - 16977712
Alignment:
| Q |
40 |
atttaacataacaattaactctttatttacttatctttcaggaaaggt |
87 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||||||| ||||||||| |
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|
| T |
16977759 |
atttaaaataaaagttaactctttatttacttatcttttaggaaaggt |
16977712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11520 - 11300
Alignment:
| Q |
1 |
atctcttttgtaaattgttgcttagctaagcatgtgtttatttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagccg |
100 |
Q |
| |
|
||||||||||||| | |||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11520 |
atctcttttgtaattcgttgctaacctaagcatgcgtttatttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagcat |
11421 |
T |
|
| Q |
101 |
acagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaagttttcaatattgcagccattatt |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||| | || || | ||||||||||||| ||||||||||||| |||||||| |||||||||||||| | || |
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|
| T |
11420 |
gcagatgccatatcatatgcatataaatctcgatctcctaggatcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgtt |
11321 |
T |
|
| Q |
201 |
catgacgtgaagcgtaagatc |
221 |
Q |
| |
|
||||| | ||||| ||||||| |
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| T |
11320 |
catgatgcgaagcataagatc |
11300 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 21628996 - 21629177
Alignment:
| Q |
40 |
atttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctact |
139 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||| ||||||||| ||||||||||||||| | |||||||||||||||||| |||||||| |||| || |
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|
| T |
21628996 |
atttaacatcacaattaactctttttttccttatatttcaggaattgttggaaagaagccggctgatgccatatcatatgcatataaatcttgagctcct |
21629095 |
T |
|
| Q |
140 |
ggaatcagtgtatctaacatctgctatgctattggaagttttcaatattgcagccattattcatgacgtgaagcgtaagatc |
221 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||||||||| |||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
21629096 |
tgaatcagtgtatctcatatctgctatggtattggaagttcccaatatggcagccaatattcatgacacgaagcgtaagatc |
21629177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 233932 - 233776
Alignment:
| Q |
65 |
tttacttatctttcaggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgct |
164 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||| |||||||||||| |||| ||||||||| |
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|
| T |
233932 |
tttaattatctttcaggaaaggttggaaagaagacggcagatgccatatcatatgcatataaatcttgagctcctggaatcagtgcatcttacatctgct |
233833 |
T |
|
| Q |
165 |
atgctattggaagttttcaatattgcagccattattcatgacgtgaagcgtaagatc |
221 |
Q |
| |
|
||||| |||||||| || || ||||||| | ||||||| | |||||||||||| |
|
|
| T |
233832 |
atgctgctggaagttccaaacatggcagccaatgttcatgatgctaagcgtaagatc |
233776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 7391563 - 7391719
Alignment:
| Q |
65 |
tttacttatctttcaggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgct |
164 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||| |||||||||||| |||| ||||||||| |
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|
| T |
7391563 |
tttaattatctttcaggaaaggttggaaagaagacggcagatgccatatcatatgcatataaatcttgagctcctggaatcagtgcatcttacatctgct |
7391662 |
T |
|
| Q |
165 |
atgctattggaagttttcaatattgcagccattattcatgacgtgaagcgtaagatc |
221 |
Q |
| |
|
||||| |||||||| ||| || ||||||| | ||||||| | |||||||||||| |
|
|
| T |
7391663 |
atgctgctggaagttcccaacatggcagccaatgttcatgatgcaaagcgtaagatc |
7391719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 48299042 - 48298892
Alignment:
| Q |
71 |
tatctttcaggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgcta |
170 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||| |||||||||||| |||| |||||||||||||| |
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|
| T |
48299042 |
tatctttcaggaaaggttggaaagaagacggcagatgccatatcatatgcatataaatcttgagctcctggaatcagtgcatcttacatctgctatgctg |
48298943 |
T |
|
| Q |
171 |
ttggaagttttcaatattgcagccattattcatgacgtgaagcgtaagatc |
221 |
Q |
| |
|
|||||||| ||| || ||||||| | ||||||| | |||||||||||| |
|
|
| T |
48298942 |
ctggaagttcccaacatggcagccaatgttcatgatgctaagcgtaagatc |
48298892 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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