View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2592_high_23 (Length: 213)
Name: NF2592_high_23
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 41940062 - 41939878
Alignment:
| Q |
14 |
cacagatacaaaaccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttctgcactcgaatgattt |
113 |
Q |
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| T |
41940062 |
cacagatacaaaaccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttctgcactcgaatgattt |
41939963 |
T |
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| Q |
114 |
ccctccgtgctttctcttgtagtgtgtttgaagggttctgaaatctttcagtggtcttgcccttggatagtttatattgtttctg |
198 |
Q |
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| T |
41939962 |
ccctccgtgctttctcttgtagtgtgtttgaagggttctgaaatctttcagtggtcttgcccttggatagtttatattgtttctg |
41939878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 21035651 - 21035710
Alignment:
| Q |
21 |
acaaaaccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaa |
80 |
Q |
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| T |
21035651 |
acaataccaaagctttccacaattcttctcatgagttctccaatctcctctaacagcaaa |
21035710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 22295873 - 22296040
Alignment:
| Q |
14 |
cacagatacaaaaccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttctgcactcgaatgattt |
113 |
Q |
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| T |
22295873 |
cacagatacaaaaccaaagctttccacagtttttctcatgtgttctccagtcacctctaactgcaaatggtttcccacactttctacacccaaatggctt |
22295972 |
T |
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| Q |
114 |
ccctccgtgctttctcttgtagtgtgtttgaagggttctgaaatctttcagtggtcttgcccttggat |
181 |
Q |
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| T |
22295973 |
tgctccatgcttcctcttgtagtgtgtttgaagtgttctgaaatccttgagtggccttgaccttggat |
22296040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 36570136 - 36569989
Alignment:
| Q |
14 |
cacagatacaaaaccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttctgcactcgaatgattt |
113 |
Q |
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||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| | ||| || || ||||| ||| ||||| || |
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| T |
36570136 |
cacagatacaataccaaagctttccacaattcttttcatgagttctccaatctcctctaacagcaaaagccttgctgcattttctacacatgaatggctt |
36570037 |
T |
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| Q |
114 |
ccctccgtgctttctcttgtagtgtgtttgaagggttctgaaatcttt |
161 |
Q |
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| T |
36570036 |
aattccatgttttctcttgtaatgtgtttgaagtgttctaaaatcttt |
36569989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 41939618 - 41939458
Alignment:
| Q |
21 |
acaaaaccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttctgcactcgaatgatttccctccg |
120 |
Q |
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|||| ||||||| |||||||| || ||||| ||||| ||||| || ||||| || ||||||| || | ||||||||| ||| |||| || ||| |
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| T |
41939618 |
acaataccaaagtttcccacagtttttctcgtgagttctccagtcacctcttactgcaaatgctttgcaacactttctacacataaatggctttattcca |
41939519 |
T |
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| Q |
121 |
tgctttctcttgtagtgtgtttgaagggttctgaaatctttcagtggtcttgcccttggat |
181 |
Q |
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| T |
41939518 |
tgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggat |
41939458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 19333551 - 19333490
Alignment:
| Q |
37 |
ccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttct |
98 |
Q |
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||||||||||| ||||||||||||||||| ||| | ||||||||||| |||| ||| ||||| |
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| T |
19333551 |
ccacaattcttttcatgagtcctccaatcacctttgacagcaaatgttttcccacattttct |
19333490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 39300634 - 39300485
Alignment:
| Q |
14 |
cacagatacaaaaccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttctgcactcgaatgattt |
113 |
Q |
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|||||||||||| |||| |||| ||||| || ||||||||||| |||||||| ||| |||| || |||| ||||| ||| |||| || ||||| ||| |
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| T |
39300634 |
cacagatacaaagccaacgcttgccacagtttttctcatgagttctccaatcacctttcactgccaatggcttcccacattttcgacaagtgaatgtttt |
39300535 |
T |
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| Q |
114 |
ccctccgtgctttctcttgtagtgtgtttgaagggttctgaaatctttca |
163 |
Q |
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| T |
39300534 |
tgaaccatgcttcctcttgtagtgtgtctgcagtgttctgaaatccttca |
39300485 |
T |
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