View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2592_high_4 (Length: 395)
Name: NF2592_high_4
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 54729645 - 54729359
Alignment:
| Q |
1 |
tatagaaatggagcaagggtaagcaaaaggataaggtaaataatatggtgttgtttgatcaggctacttatgataagctcgttactccttctgttctctc |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54729645 |
tatagaaatggagcaagggtaagcaaaaggagaaggtaaataatatggtgttgtttgatcaggctacttatgataagctcgttactccttctgttctttc |
54729546 |
T |
|
| Q |
101 |
tgatcgtttgagggtaaatcttgttttaccctttttatctttattaatggattagttgcatttggaagtaatattttgatacattttatgtatattgc-- |
198 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
54729545 |
tgatcgtttgagggtaaatcttcttttaccctttttatctttattaatggattagttgcatttggaagtagtattttgatacattttatgtatattgcaa |
54729446 |
T |
|
| Q |
199 |
----aattgttggaattttgatgctactaaggaggtttaaggctgttgcttgattggtaatcttgtataagctccaacattccttga |
281 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54729445 |
tattaattgttggaattttgatgctactaaggaggtttacggctgttgcttgattggtaatcttgtataagctctaacattccttga |
54729359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 5304036 - 5303750
Alignment:
| Q |
1 |
tatagaaatggagcaagggtaagcaaaaggataaggtaaataatatggtgttgtttgatcaggctacttatgataagctcgttactccttctgttctctc |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5304036 |
tatagaaatggagcaagggtaagcaaaaggagaaggtaaataatatggtgttgtttgatcaggctacttatgataagctcgttactccttctgttctctc |
5303937 |
T |
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| Q |
101 |
tgatcgtttgagggtaaatcttgttttaccctttttatctttattaatggattagttgcatttggaagtaatattttgatacattttatgtatattgc-- |
198 |
Q |
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| T |
5303936 |
tgatcgtttgagggtaaatctacttttaccctttttatctttattaatggattagttgcatttggaagtagtattttgatacattttatgtatattgcaa |
5303837 |
T |
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| Q |
199 |
----aattgttggaattttgatgctactaaggaggtttaaggctgttgcttgattggtaatcttgtataagctccaacattccttga |
281 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
5303836 |
tattaattgttggaattttgatgctactaaggaggtttacggctgtttcttgattggtaatcttgtataagctctaacattccttga |
5303750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 26590023 - 26589947
Alignment:
| Q |
4 |
agaaatggagcaagggtaagcaaaaggataaggtaaataatatggtgttgtttgatcaggctacttatgataagctc |
80 |
Q |
| |
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|||| ||||||||||| ||||||||||| ||||| || || |||||| |||||||||||| ||| ||||| |||||| |
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| T |
26590023 |
agaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggtgctgtttgatcagggtacctatgacaagctc |
26589947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 26589925 - 26589878
Alignment:
| Q |
75 |
aagctcgttactccttctgttctctctgatcgtttgagggtaaatctt |
122 |
Q |
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|||||| | ||||||||||| |||||||||||||||||||||| |||| |
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| T |
26589925 |
aagctcatcactccttctgtcctctctgatcgtttgagggtaattctt |
26589878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 36418074 - 36418149
Alignment:
| Q |
4 |
agaaatggagcaagggtaagcaaaaggataaggtaaataatatggtgttgtttgatcaggctacttatgataagct |
79 |
Q |
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||||||||||||| ||||| |||||||| ||||| || || ||||| ||||||||||| | ||| ||||||||||| |
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| T |
36418074 |
agaaatggagcaaaggtaaacaaaaggaaaaggttaacaacatggtcttgtttgatcaaggtacctatgataagct |
36418149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 292166 - 292128
Alignment:
| Q |
84 |
actccttctgttctctctgatcgtttgagggtaaatctt |
122 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||| |
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| T |
292166 |
actccttctgtcctctctgatcgtttgagggtaattctt |
292128 |
T |
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