View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2592_low_1 (Length: 456)
Name: NF2592_low_1
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 8403342 - 8403091
Alignment:
| Q |
18 |
cagattgaaccaagtgttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctctaattaacaaaaaa--tg |
115 |
Q |
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| T |
8403342 |
cagattgaaccaagtgttgggcgttgacgcaacccggatagggaaatattctccatgatatgaacaaaa-tgatgtatcccctaattaacaaaaaaaatg |
8403244 |
T |
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| Q |
116 |
tcatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgttgacgataaa |
215 |
Q |
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| T |
8403243 |
ccatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgttgacgataac |
8403144 |
T |
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| Q |
216 |
cattatattttgcctgcattgcaatttgagaattttaattcattattgagcaa |
268 |
Q |
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| T |
8403143 |
cattatcttttgcctccattgcaatttgagaattttaattcattattgagcaa |
8403091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 327 - 446
Target Start/End: Complemental strand, 8402635 - 8402517
Alignment:
| Q |
327 |
tatcccaaattacccatgttcataggggatattggggaatcgaccattgaatacattgcaaaattctccacaaaaatatgggaatttgcaatggttaaaa |
426 |
Q |
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| T |
8402635 |
tatcccaaattacccatgttcataggggatattggggaatcgagcattgaatacattgcaaaattctccacaaaaatatgggaatttgcaatggtt-aaa |
8402537 |
T |
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| Q |
427 |
atgagtttatcacaggttct |
446 |
Q |
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| T |
8402536 |
atgagtttatcacaggttct |
8402517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 299 - 446
Target Start/End: Complemental strand, 8428796 - 8428650
Alignment:
| Q |
299 |
acatattgaagtcccaagaggcgctaaatatcccaaattacccatgttcataggggatattggggaatcgaccattgaatacattgcaaaattctccaca |
398 |
Q |
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| T |
8428796 |
acatgttgaagtcccaagaggcgctaaatatcccaaattggccatgttcataggggatattggggaatcaatcattaaacacattgcaaaattctccaca |
8428697 |
T |
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| Q |
399 |
aaaatatgggaatttgcaatggttaaaaatgagtttatcacaggttct |
446 |
Q |
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| T |
8428696 |
aaaatatgggaatttgcaatagtt-aaaatgagtttatcccaagttct |
8428650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 8429218 - 8428991
Alignment:
| Q |
21 |
attgaaccaagtgttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctctaattaacaaaaaatgtcata |
120 |
Q |
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| T |
8429218 |
attgaaccaagtgttaggcattgacacaacctggatagggaaacactctccaggata---acaaaa-tcatttatcccctaattgacgaaaaatgccata |
8429123 |
T |
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| Q |
121 |
ttca----catgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgttgacgataaac |
216 |
Q |
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| T |
8429122 |
ttcatatgcatgaatcttgggaatgttaatgagcataggagacaaatgaatagcgacatggttcaaacatagttctaaaatgccaatctcgacattaacc |
8429023 |
T |
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| Q |
217 |
attatattttgcctgcattgcaatttgagaat |
248 |
Q |
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| T |
8429022 |
attatcgtttgccaccattgcaatatgagaat |
8428991 |
T |
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