View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2592_low_10 (Length: 368)
Name: NF2592_low_10
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 33901417 - 33901061
Alignment:
| Q |
1 |
agtttagttttcgtaaaaatcacggagcta-gttagtattagtaatttacacttactataggaacaaagtatttagaaatctggtcagcatatttctgga |
99 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33901417 |
agtttagttttcgtaaaaatcacggagctaagttagtattagtaatttacacttactataggaacaaagtatttagaaatctggtcagcatatttctgga |
33901318 |
T |
|
| Q |
100 |
caggagctttagccatctgagcagactcaacaagtctaacaatctgtgaaagtgcagtttctgatccaacccttgttaccttaacatgcaaaacaccatt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33901317 |
caggagctttagccatctgagcagactcaacaagtctaacaatctgtgaaagtgcagtttctgatccaatccttgttaccttaacatgcaaaacaccatt |
33901218 |
T |
|
| Q |
200 |
ctcattcacagtaccaccaatcaccatatcacccttcatcttagcaacaggctttgcctcaccagttatcatactctcatttacatgactttgtccccaa |
299 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33901217 |
ttcattcacagtaccaccaatcaccatatcacccttcatcttagcaacaggctttgcctcaccagttatcatactctcatttacatgactttgtccccaa |
33901118 |
T |
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| Q |
300 |
acaacaaaaccatccgatgctactttcgtgcccggcacaactttgatcacatcattc |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33901117 |
acaacaaaaccatccgatgctactttcgtgcccggcacaactttgatcacatcattc |
33901061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 33918942 - 33918587
Alignment:
| Q |
1 |
agtttagttttcgtaaaaatcacggagctagttagtattagtaatttacacttactataggaacaaagtatttagaaatctggtcagcatatttctggac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33918942 |
agtttagttttcgtaaaaatcacggagctagttagtattagtaatttacacttactataggaacaaagtatttagaaatctggtcagcatatttctggac |
33918843 |
T |
|
| Q |
101 |
aggagctttagccatctgagcagactcaacaagtctaacaatctgtgaaagtgcagtttctgatccaacccttgttaccttaacatgcaaaacaccattc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33918842 |
aggagctttagccatctgagcagactcaacaagtctaacaatctgggaaagtgcagtttctgatccaacccttgctaccttaacatgcaaaacaccattt |
33918743 |
T |
|
| Q |
201 |
tcattcacagtaccaccaatcaccatatcacccttcatcttagcaacaggctttgcctcaccagttatcatactctcatttacatgactttgtccccaaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918742 |
tcattcacagtaccaccaatcaccatatcacccttcatcttagcaacaggctttgcctcaccagttatcatactctcatttacatgactttgtccccaaa |
33918643 |
T |
|
| Q |
301 |
caacaaaaccatccgatgctactttcgtgcccggcacaactttgatcacatcattc |
356 |
Q |
| |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
33918642 |
caacaaaaccatctgatgctactttcgcgcccggcacaactttgatcacatcattc |
33918587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 63 - 304
Target Start/End: Original strand, 2781435 - 2781676
Alignment:
| Q |
63 |
acaaagtatttagaaatctggtcagcatatttctggacaggagctttagccatctgagcagactcaacaagtctaacaatctgtgaaagtgcagtttctg |
162 |
Q |
| |
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||||||||||| ||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| |
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| T |
2781435 |
acaaagtatttggaaatgcgatcagcaaacttctggacaggagctttagccatctgagcagactcaacaagtcgtacaatctgtgaaagagcactttctg |
2781534 |
T |
|
| Q |
163 |
atccaacccttgttaccttaacatgcaaaacaccattctcattcacagtaccaccaatcaccatatcacccttcatcttagcaacaggctttgcctcacc |
262 |
Q |
| |
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|||||||| ||||| |||| |||||||| |||||||| ||||||| ||| |||||||| || ||||| | ||| |||||| || || ||||||||| |
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| T |
2781535 |
atccaacctttgttgcctttacatgcaagacaccattttcattcaaagttccaccaataacagtatcatctttcctcttagacacgggacgtgcctcacc |
2781634 |
T |
|
| Q |
263 |
agttatcatactctcatttacatgactttgtccccaaacaac |
304 |
Q |
| |
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||||||||||||||||| |||||||| || ||||||||||| |
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|
| T |
2781635 |
tgttatcatactctcattcacatgactctgcccccaaacaac |
2781676 |
T |
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