View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2592_low_11 (Length: 360)

Name: NF2592_low_11
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2592_low_11
NF2592_low_11
[»] chr3 (1 HSPs)
chr3 (163-360)||(24618380-24618577)
[»] chr8 (11 HSPs)
chr8 (164-360)||(1343992-1344188)
chr8 (164-360)||(1355399-1355595)
chr8 (3-118)||(1355234-1355349)
chr8 (195-360)||(1361102-1361261)
chr8 (65-118)||(1344238-1344291)
chr8 (254-330)||(1350480-1350556)
chr8 (285-329)||(1350559-1350603)
chr8 (195-267)||(1350615-1350687)
chr8 (328-360)||(11368951-11368983)
chr8 (323-360)||(1350438-1350475)
chr8 (82-127)||(1361280-1361329)
[»] chr2 (1 HSPs)
chr2 (233-302)||(43364468-43364537)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 163 - 360
Target Start/End: Complemental strand, 24618577 - 24618380
Alignment:
Q  163 ctatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttcc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24618577 ctatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttcc 24618478  T
Q  263 ctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatcatcttcttccttcaaagaagaattcttctgttggtcttt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24618477 ctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatcatcttcttccttcaaagaagaattcttctgttggtcttt 24618380  T

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Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 164 - 360
Target Start/End: Complemental strand, 1344188 - 1343992
Alignment:
Q  164 tatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccc 263  Q
    ||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  1344188 tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc 1344089  T
Q  264 tgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatcatcttcttccttcaaagaagaattcttctgttggtcttt 360  Q
    |||||||| ||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  1344088 tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatcatcttcttccttcaaagaagaattcttctgttgatcttt 1343992  T

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Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 164 - 360
Target Start/End: Original strand, 1355399 - 1355595
Alignment:
Q  164 tatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccc 263  Q
    ||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  1355399 tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc 1355498  T
Q  264 tgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatcatcttcttccttcaaagaagaattcttctgttggtcttt 360  Q
    |||||||| ||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  1355499 tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatcatcttcttccttcaaagaagaattcttctgttgatcttt 1355595  T

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Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 1355234 - 1355349
Alignment:
Q  3 ttctaattattatgttgtaacctgcaagagtaaaaatataattaatgccaatttatactaatgatttctaatcctgaacaagatttgctaatattgagaa 102  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1355234 ttctaattattatgctgtaacctgcaagagtaaaaatataataaatgtcaacttatactaatgatttctaatcctgaacaagatttgctaatattgagaa 1355333  T
Q  103 gagttttgtccataag 118  Q
    ||||||||||||||||    
T  1355334 gagttttgtccataag 1355349  T

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Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 195 - 360
Target Start/End: Complemental strand, 1361261 - 1361102
Alignment:
Q  195 ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaat 294  Q
    |||||||||||||| || | |||||||| | || ||| ||||||||||| |||||||||||||||||  ||||| |  ||      ||| | ||||||||    
T  1361261 ctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcatt------aagtcatgatcaat 1361168  T
Q  295 ctcatcattaaactcaaccacaggatcatcttcttccttcaaagaagaattcttctgttggtcttt 360  Q
    |||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||    
T  1361167 ctcatcatcaaactcaaccacaggaccctcttcttccttcatagaagaattcttctgttggtcttt 1361102  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 1344291 - 1344238
Alignment:
Q  65 gatttctaatcctgaacaagatttgctaatattgagaagagttttgtccataag 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1344291 gatttctaatcctgaacaagatttgctaatattaagaagagttttgtccataag 1344238  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 1350556 - 1350480
Alignment:
Q  254 tccacttccctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatcatcttcttc 330  Q
    ||||||| | ||||||||||| ||   ||| |||||||||||| ||||| ||||||||||||| |||| ||||||||    
T  1350556 tccacttgcttgtcaatttttgccgttaaggcctgatcaatcttatcatcaaactcaaccacatgatcctcttcttc 1350480  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 1350603 - 1350559
Alignment:
Q  285 cctgatcaatctcatcattaaactcaaccacaggatcatcttctt 329  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||    
T  1350603 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 1350559  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 1350687 - 1350615
Alignment:
Q  195 ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtc 267  Q
    |||||||| ||||| || | ||||||||| |||  || ||||||||||| ||||||||||||||||| |||||    
T  1350687 ctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 1350615  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 360
Target Start/End: Complemental strand, 11368983 - 11368951
Alignment:
Q  328 ttccttcaaagaagaattcttctgttggtcttt 360  Q
    |||||||||||||||||||||||||||||||||    
T  11368983 ttccttcaaagaagaattcttctgttggtcttt 11368951  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 1350475 - 1350438
Alignment:
Q  323 tcttcttccttcaaagaagaattcttctgttggtcttt 360  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  1350475 tcttcttctttcatagaagaattcttctgttggtcttt 1350438  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 1361329 - 1361280
Alignment:
Q  82 aagatttgctaata----ttgagaagagttttgtccataaggttactcat 127  Q
    ||||||||||||||    |||||||||||||| |||||||||||||||||    
T  1361329 aagatttgctaataattgttgagaagagttttatccataaggttactcat 1361280  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 43364468 - 43364537
Alignment:
Q  233 tttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaatctcatcat 302  Q
    ||||||||||| |||||||||||||||||||| |||||| || | || ||| || |||||||||||||||    
T  43364468 tttaatctgcgggcaaattcttccacttccctatcaattcttgcttgtaaggccggatcaatctcatcat 43364537  T

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