View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2592_low_15 (Length: 293)
Name: NF2592_low_15
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 273
Target Start/End: Complemental strand, 29334040 - 29333786
Alignment:
| Q |
6 |
gtgagaagaagagctcaagtaactagtcgcaaataacaactttgaccagacagaactgagtaacgggtttttactgccactacattaacccccattaacc |
105 |
Q |
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| T |
29334040 |
gtgataagaagagctcaagtaaccacccgcaaataacaactttgactagacagaactga---acgggtttttactgccactacattaaccc--------- |
29333953 |
T |
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| Q |
106 |
ctatataataagagaaaaacccttcttcacaaattacaatactgccactgtctttcttctaaaattcaacagaaaagctgacgtggaacgccgccataac |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29333952 |
-tatataataagagaaaaacccttcttcacaaattacaatactgccactgtctttcttctaaaattcaacagaaaagctgacgtggaacgccgccataac |
29333854 |
T |
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| Q |
206 |
agaatgaaactgaaattcacttttccctccaaaaaccgccaccgaacctccacttccgcctccgtcac |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29333853 |
agaatgaaactgaaattcacttttccctccaaaaaccgccaccgaacctccacttccgcctccgtcac |
29333786 |
T |
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