View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2592_low_2 (Length: 448)
Name: NF2592_low_2
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 1285882 - 1286302
Alignment:
| Q |
18 |
aaagggacaaaacaacatatcaaaatacttgagggacatttgataacggttctaatttttaaaaggttttcttgcaattctataagcttgttgttttctt |
117 |
Q |
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| T |
1285882 |
aaagggacaaaacaacatatcaaaatacttgagggacatttgataacgattctaatttttaaaaggttttcttgcaattctataagcttgttgttttctt |
1285981 |
T |
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| Q |
118 |
attaatatagtttgaggttctttatactatataaagtatgatgaattagtttgttgattgttatatgcaaaacaaaatatgactacattttttaagtctg |
217 |
Q |
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| T |
1285982 |
attaatatagtttgaggttctttatactatataaagtatgatgaattagtttgttgattgttatatgcaaaacaaaatatgactacattttttaagtctg |
1286081 |
T |
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| Q |
218 |
tgtatactatgatcatcttgcttctcctatttctttttgtaacaaatgcgagtaagtttttctctcttcaatttcatgcatgtttcatttttgcccttat |
317 |
Q |
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| T |
1286082 |
tgtatactatgatcatcttgcttctcctatttctttttgtaacaaatgcgagtaagtgtttctctcttcaatttcatgcatgtttcatttttgcccttat |
1286181 |
T |
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| Q |
318 |
acattatacttcaaccctttttaataattttcttttattattgttttacatcacagctgctaattgtacatctaccgtcaattgtgtacatactccgtgt |
417 |
Q |
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| T |
1286182 |
acattatacttcaaccctttttaataattttcttttattattgttttacattacagctgctaattgtacatctaccgtcaattgtgtacatactccgtgt |
1286281 |
T |
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| Q |
418 |
atgtcacctaccttgcctttg |
438 |
Q |
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| T |
1286282 |
atgtcacctaccttgcctttg |
1286302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 1293769 - 1293848
Alignment:
| Q |
18 |
aaagggacaaaacaacatatcaaaatacttgagggacatttgataacggttctaatttttaaaaggttttcttgcaattc |
97 |
Q |
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|||||||||||||||||| ||||||||||| || | ||||| ||||| ||| ||||| |||||| ||||||||||||| |
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| T |
1293769 |
aaagggacaaaacaacatgtcaaaatacttaagaggcatttaataactactctgattttaaaaaggctttcttgcaattc |
1293848 |
T |
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