View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2592_low_23 (Length: 234)
Name: NF2592_low_23
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_low_23 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 33901781 - 33901561
Alignment:
| Q |
14 |
tgatcaacacaccttgagttgcaccaactccggtaccaaccatgaccgctgtaggagtggctaggcctagagcacaaggacaagctatgaccatgactga |
113 |
Q |
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| T |
33901781 |
tgatcaacacaccttgagttgcaccaactccggtaccaaccatgaccgctgtaggagtggctaggcctagagcacaaggacaagctatgaccatgactga |
33901682 |
T |
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| Q |
114 |
aattccaaactgaagtgcaagctcaaaactattcatagaagatggtatccatgattttgggtatgaatgcaattttctagctacaaaccatgatatccat |
213 |
Q |
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| T |
33901681 |
aattccaaactgaagtgcaagctcaaaactattcatagaagatggtatccatgattttgggtatgaatgcaattttccagctacaaaccatgatatccat |
33901582 |
T |
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| Q |
214 |
gttgaaagagataacacaatc |
234 |
Q |
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| T |
33901581 |
gttgaaagagataacacaatc |
33901561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 33919303 - 33919085
Alignment:
| Q |
14 |
tgatcaacacaccttgagttgcaccaactccggtaccaaccatgaccgctgtaggagtggctaggcctagagcacaaggacaagctatgaccatgactga |
113 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
33919303 |
tgatcaacacaccttgagttgcaccaactccagtaccaaccatgaccgctgtaggagtag--aggcctagagcacaaggacaagctatgaccatgactga |
33919206 |
T |
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| Q |
114 |
aattccaaactgaagtgcaagctcaaaactattcatagaagatggtatccatgattttgggtatgaatgcaattttctagctacaaaccatgatatccat |
213 |
Q |
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| T |
33919205 |
aattccaaactgaagtgcaagctcgaaattattcatagaagatggtatccatgattttgggtatgaatgcaattttccagctacaaaccatgatatccat |
33919106 |
T |
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| Q |
214 |
gttgaaagagataacacaatc |
234 |
Q |
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| T |
33919105 |
gttgaaagagataacacaatc |
33919085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 2781032 - 2781194
Alignment:
| Q |
14 |
tgatcaacacaccttgagttgcaccaactccggtaccaaccatgaccgctgtaggagtggctaggcctagagcacaaggacaagctatgaccatgactga |
113 |
Q |
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||||||| ||||| |||| |||||||||||| || |||||||| || || ||||| ||||||| || | ||||||||| ||||| || |||||||| || |
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| T |
2781032 |
tgatcaatacaccctgagatgcaccaactccagttccaaccataacagcggtaggtgtggctaaacccaaagcacaagggcaagcaataaccatgacaga |
2781131 |
T |
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| Q |
114 |
aattccaaactgaagtgcaagctcaaaactattcatagaagatggtatccatgattttgggta |
176 |
Q |
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||||||||||| || ||||||||||| || | ||| ||||| || ||||| ||||| ||||| |
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| T |
2781132 |
tattccaaactgcagagcaagctcaaagctgtccatggaagacggaatccaagatttcgggta |
2781194 |
T |
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