View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2592_low_3 (Length: 434)
Name: NF2592_low_3
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 419
Target Start/End: Complemental strand, 29333752 - 29333343
Alignment:
| Q |
10 |
agaatcttcacttcgcaaccctttcgaaccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaac |
109 |
Q |
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| T |
29333752 |
agaatcttcccttcgcaaccctttcgaaccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaac |
29333653 |
T |
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| Q |
110 |
caagacgaatcactcctccatggcttcgaacttcaacaacacgtcgaaacgattcttcaatccaacgatctttcattgcttcaagaagtaatcgacgagt |
209 |
Q |
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| T |
29333652 |
caagacgaatcactcctccatggcttcgaacttcaacaacacgtcgcaacgattcttcaatccaacgatctttcatcgcttcaagaagtaatcgacgagt |
29333553 |
T |
|
| Q |
210 |
acgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaatt |
309 |
Q |
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| T |
29333552 |
acgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaatt |
29333453 |
T |
|
| Q |
310 |
tcaacctccgattcaaacgagaatcgaaaccgttaatcatcttcttcaagttcttcccgaaggaattaacggtcctttcaattctattatcttactcgaa |
409 |
Q |
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| T |
29333452 |
tcaacctccgattcaaacgagaatcgaaaccgttaatcatcttcttcaagttcttcccgaaggaattaacggtcctttcaattctattatcttactcgaa |
29333353 |
T |
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| Q |
410 |
ctgaagaatc |
419 |
Q |
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| T |
29333352 |
ctgaagaatc |
29333343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 97 - 280
Target Start/End: Complemental strand, 29305285 - 29305102
Alignment:
| Q |
97 |
catcgaagaaaaccaagacgaatcactcctccatggcttcgaacttcaacaacacgtcgaaacgattcttcaatccaacgatctttcattgcttcaagaa |
196 |
Q |
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||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||| ||||| | |||| | ||||||||| || || | | | |||||| |
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| T |
29305285 |
catcgaagaaaaccaagacagatcactcatccacggcttcgaacttcgacaacacgccgaaaggtttctcctatccaacgacctctcgtcgttgcaagaa |
29305186 |
T |
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| Q |
197 |
gtaatcgacgagtacgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattc |
280 |
Q |
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| T |
29305185 |
gcaatcgatgaatactctcaaaccaggaatcaatctttattcacgattttcaaatctttcacacttcattatcctaacgcattc |
29305102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 29322533 - 29322419
Alignment:
| Q |
38 |
ccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctccatggcttcg |
137 |
Q |
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|||||||||||||| |||| |||||| |||||||||||||| | ||||| |||| ||||||||| | |||||||| |||||||| |||| ||| || |
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| T |
29322533 |
ccggatataaacccaccactgcgcaatcacttggaagaaataatgaacaagagaaggcgcatcgaacacaaccaagataaatcactcatccacggcctcc |
29322434 |
T |
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| Q |
138 |
aacttcaacaacacg |
152 |
Q |
| |
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|||||||| |||||| |
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| T |
29322433 |
aacttcaagaacacg |
29322419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 29296069 - 29296005
Alignment:
| Q |
243 |
ttttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaa |
307 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||| || || || || ||||||||| |
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| T |
29296069 |
ttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaa |
29296005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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