View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2592_low_5 (Length: 406)
Name: NF2592_low_5
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 60 - 334
Target Start/End: Complemental strand, 1344596 - 1344322
Alignment:
| Q |
60 |
ttaacattgagaaaccgaaaagtaacacactgacttcacaatcacaaggaaattgttgcatagttgaaatagtgataaagctattcaaaatttaaaaatg |
159 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
1344596 |
ttaacattgagaaaccaaatagtaacacactgacttcacaatcacaaggaaattgttgcatagttgaaatagtgatgaagcaattcaaaatttaaaaatg |
1344497 |
T |
|
| Q |
160 |
cttactctaccaaaacagatattgtcgagtgatcgacataaaatgagattatcgatcgagtagatagctcaagcactcatagaagtggaactttctaaaa |
259 |
Q |
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||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1344496 |
cttactctaccaaaacagatattgtagagcgatcggcataaaatgagattaccgattaagtagatagctcaagcactcatagaagtggaactttctaaaa |
1344397 |
T |
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| Q |
260 |
gatttacatgattctaatatttgaaatcatgcaccgtgttcaacacaatatagcattagcatcataattataatc |
334 |
Q |
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| T |
1344396 |
gatttacgtcattctaatatttgaaatcatgcaccgtgttcagcacaatatagcattagcatgataattataatc |
1344322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 61 - 283
Target Start/End: Original strand, 1354967 - 1355189
Alignment:
| Q |
61 |
taacattgagaaaccgaaaagtaacacactgacttcacaatcacaaggaaattgttgcatagttgaaatagtgataaagctattcaaaatttaaaaatgc |
160 |
Q |
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||||||| |||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
1354967 |
taacattaagaaactaaatagtaacacattgacttcacaatcacaaggaaattcttgcatagttgaaatagtgatgaagcaattcaaaatttaaaaatgc |
1355066 |
T |
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| Q |
161 |
ttactctaccaaaacagatattgtcgagtgatcgacataaaatgagattatcgatcgagtagatagctcaagcactcatagaagtggaactttctaaaag |
260 |
Q |
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| T |
1355067 |
ttactctaccaaaacagatattgtgaagtgatcgacataaaacgagattatcgattgagtagatagctcaagcactcatagaaatggaactttctaaaag |
1355166 |
T |
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| Q |
261 |
atttacatgattctaatatttga |
283 |
Q |
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||||||||||| ||||||||||| |
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| T |
1355167 |
atttacatgatcctaatatttga |
1355189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 29051911 - 29052064
Alignment:
| Q |
17 |
attttctaattacctctggaaaactttgtaaatttgagaattattaacattgagaaaccgaaaagtaacacactgacttcacaatcacaaggaaattgtt |
116 |
Q |
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|||||| |||||| | | |||||||| ||||||||| ||| ||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |
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| T |
29051911 |
attttcaaattacatatagaaaacttcacaaatttgagcatttctaacattgagaaaccaaatagtaacacactgacttcacaatcacaaagaaattgtt |
29052010 |
T |
|
| Q |
117 |
gcatagttgaaatagtgataaagctattcaaaatttaaaaatgcttactctacc |
170 |
Q |
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| T |
29052011 |
gcatagttgaaatagtgatgaagcaattcaaaatttaaaaatgcttactctacc |
29052064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 24618701 - 24618637
Alignment:
| Q |
17 |
attttctaattacctctggaaaactttgtaaatttgagaattattaacattgagaaaccgaaaag |
81 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24618701 |
attttctaattacctctagaaaactttgtaaatttgagaattattaacattgagaaaccgaaaag |
24618637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 34265359 - 34265403
Alignment:
| Q |
115 |
ttgcatagttgaaatagtgataaagctattcaaaatttaaaaatg |
159 |
Q |
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||||||||||||||||| ||| |||| ||||||||||| |||||| |
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| T |
34265359 |
ttgcatagttgaaatagggatgaagcaattcaaaattttaaaatg |
34265403 |
T |
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