View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2592_low_7 (Length: 384)
Name: NF2592_low_7
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2592_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 143 - 368
Target Start/End: Original strand, 37600066 - 37600291
Alignment:
| Q |
143 |
tgatatttgcagtaatggttggtataatagtgagatgaagaaaatatttgtagtgtcaatttatacaaatgaaacggtgattcgtagcaagaaatcatat |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37600066 |
tgatatttgcagtaatggttggtataatagtgagatgaagaaaatatttgtagtgtcaatttatacaaatgaaatggtgattcgtagcaagaaatcatat |
37600165 |
T |
|
| Q |
243 |
atctttggaaaaggatctttatgtgagtatacaggagagaacattttttatactgttcacacggagcagctagtggtgaaagcaaaagggtgtgttctct |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37600166 |
atctttggaaaaggatctttatgtgagtatacaagagagaacattttttatactgttcacacggagcagctagtggtgaaagcaaaagggtgtgttctct |
37600265 |
T |
|
| Q |
343 |
gtttgctcacctaaaatcatatatct |
368 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
37600266 |
gtttactcacctaaaatcatatatct |
37600291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 37599424 - 37599555
Alignment:
| Q |
1 |
ttataatctccatagatg---ccaataagacctgaactgaaatgataaacagaagcatttgcatgattagaagccacattagctcgggatcattttcaat |
97 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37599424 |
ttataatctccatagatgatgccaataagacctgaactgaaatgataaacagaagcatttgcatgattagaagccacattagctcgggatcattttcaat |
37599523 |
T |
|
| Q |
98 |
agcctctaaaatttcatagggaaggcgcattt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
37599524 |
agcctctaaaatttcatagggaaggcgcattt |
37599555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 37606415 - 37606516
Alignment:
| Q |
180 |
aagaaaatatttgtagtgtcaatttatacaaatgaaacggtgattcgtagcaagaaatcatatatctttggaaaaggatctttatgtgagtatacaggag |
279 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || || |||| |||||||||||||||||||||||||| |||||||| |||||| |||| || ||| |
|
|
| T |
37606415 |
aagaaaatatttgtagtatcaatttatacaaatgcaatggagattggtagcaagaaatcatatatctttggagaaggatctatatgtgggtatgcaagag |
37606514 |
T |
|
| Q |
280 |
ag |
281 |
Q |
| |
|
|| |
|
|
| T |
37606515 |
ag |
37606516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 34750991 - 34751057
Alignment:
| Q |
198 |
tcaatttatacaaatgaaacggtgattcgtagcaagaaatcatatatcttt-ggaaaaggatcttta |
263 |
Q |
| |
|
|||||||||||||||| | || |||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34750991 |
tcaatttatacaaatgctatggagattggtagcaagaaatcatatatctttgggaaaaggatcttta |
34751057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University