View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2592_low_9 (Length: 373)

Name: NF2592_low_9
Description: NF2592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2592_low_9
NF2592_low_9
[»] chr4 (2 HSPs)
chr4 (24-234)||(21174177-21174384)
chr4 (256-373)||(21174450-21174567)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 21174177 - 21174384
Alignment:
Q  24 caattttctttttattttataaaaatcttgtacctttttcaagattatagcttcaacttatttgaaccaagaattagagttaaaaataagannnnnnnag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||       ||    
T  21174177 caattttctttttattttataaaaatcttgtacctttttcaagattatagcttcaacttatttgaaccaagaat---agttaaaaataagatttttttag 21174273  T
Q  124 aaaaatgggtgagatgaaaattattattaattaaaatgacactaaatattattttgcatttttctctaactctatgatcccttcaccaaagtgacatctc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21174274 aaaaatgggtgagatgaaaattattattaattaaaatgacactaaatattattttacatttttctctaactctatgatcccttcaccaaagtgacatctc 21174373  T
Q  224 atgaacgatag 234  Q
    |||||| ||||    
T  21174374 atgaacaatag 21174384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 256 - 373
Target Start/End: Original strand, 21174450 - 21174567
Alignment:
Q  256 ttaatttaagacatgaaatctgtttgtctgggtagtggaaacctaatcaccttccatgaatataatcatannnnnnnnnnnngatattgatatgtaggtg 355  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||| ||||||||    
T  21174450 ttaatttaagacatgaaatttgtttgtctgggtagtggaaacctaatcaccttccatgaatataatcatattttttatttttgatattgatttgtaggtg 21174549  T
Q  356 gtcaattatagcagctca 373  Q
    ||||||||||||||||||    
T  21174550 gtcaattatagcagctca 21174567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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