View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_high_20 (Length: 248)
Name: NF2593_high_20
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_high_20 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 8367538 - 8367308
Alignment:
| Q |
3 |
aggagaaaggtgtttgcaggcacgttagcacttcaccaacactcaagttagtatctgagagaagtggatatgtgcgaaaatatggtaaaaatgaattgtg |
102 |
Q |
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| T |
8367538 |
aggagaaaggtgtttgcaggcacgttagcactccaccaacactcaagttagtatatgagagaagtggttatatgcaaaaatatgataaaaatgaattgtg |
8367439 |
T |
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| Q |
103 |
acgttgaatcacttttatataggtgcggtaaacgttaacgacttctatgaaatgcggagccatcttaggaggctgttagagacactgtaattggtggaga |
202 |
Q |
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| T |
8367438 |
atgttgaatcacttttatataggtgcggtgaacgttaacgacttctatgaaatgcggagccatcttaggaggccgttagagacactgtaattggtggaga |
8367339 |
T |
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| Q |
203 |
tggagtcagggcgtgcttctatgaggtaatt |
233 |
Q |
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| T |
8367338 |
tggagtcagggcgtgcttctatgaggtaatt |
8367308 |
T |
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Target: scaffold0140 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 6289 - 6317
Alignment:
| Q |
8 |
aaaggtgtttgcaggcacgttagcacttc |
36 |
Q |
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| T |
6289 |
aaaggtgtttgcaggcacgttagcacttc |
6317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 4229843 - 4229875
Alignment:
| Q |
2 |
gaggagaaaggtgtttgcaggcacgttagcact |
34 |
Q |
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| T |
4229843 |
gaggagaaaggtgtttgtaggcacgttagcact |
4229875 |
T |
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