View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_high_23 (Length: 239)
Name: NF2593_high_23
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_high_23 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0658 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 5053755 - 5053982
Alignment:
| Q |
11 |
catcatcaaggggtcaagagacaaaatttgtataaataattagcagacattcaccaagtgttttcaaatcaaatttggataaataaattaattaagtcaa |
110 |
Q |
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| T |
5053755 |
catcattaaggggtcaaga--caaaaactgtataaataattagcagacattcaccaagtgtttccaaatcaaatttggataaataaattaattaagtcaa |
5053852 |
T |
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| Q |
111 |
accctttatgcataaaacttcaccttttatttggccatatcaatc-taaataattaaatagaaacataaataattgtttaattgttatgcctaactaaga |
209 |
Q |
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| T |
5053853 |
accctttaagcataaaacttcaccttttatttggccatatcaatcgtaaataattaaatagaaacataaataattgtttaattgttatgcctaactaaga |
5053952 |
T |
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| Q |
210 |
caaatataagtaataccaggaaatctagct |
239 |
Q |
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| T |
5053953 |
caaatataagtaataccaggaaacctagct |
5053982 |
T |
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Target: scaffold0658 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0658
Description:
Target: scaffold0658; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 2438 - 2500
Alignment:
| Q |
123 |
taaaacttcaccttttatttggccat-atcaatcta---aataattaaatagaaacataaata |
181 |
Q |
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| T |
2438 |
taaaacttcaccttttgtttggccatggtcaatctagatgataattaaatagaaacataaata |
2500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 27361459 - 27361397
Alignment:
| Q |
123 |
taaaacttcaccttttatttggccat-atcaatcta---aataattaaatagaaacataaata |
181 |
Q |
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|||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
27361459 |
taaaacttcaccttttgtttggccatggtcaatctagatgataattaaatagaaacataaata |
27361397 |
T |
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