View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_high_24 (Length: 227)
Name: NF2593_high_24
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 13014941 - 13014786
Alignment:
| Q |
17 |
atactcggtgaaaaacacttacaaacttgtcatttgcgataagttgtaagaatatacaaaatgataaaattattaccacaaactttcaatgatgaagaaa |
116 |
Q |
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| T |
13014941 |
atactcggtgaaaaacacttacaaacttgtcatttgcgataagttgtaagaatatacaaaatgataaaattattaccacaaactttcaatgatgaagaaa |
13014842 |
T |
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| Q |
117 |
tcaatgattttgtttttgaatggtttctagccaacaattgcagtttttgatacgca |
172 |
Q |
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| T |
13014841 |
tcaatgattttgtttttgaatggtttctagccaacaattgcagtttttgatacgca |
13014786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 49463350 - 49463437
Alignment:
| Q |
19 |
actcggtgaaaaacacttacaaacttgtcatttgcgataagttgtaagaatataca-aaatgataaaattattaccacaaactttcaa |
105 |
Q |
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| T |
49463350 |
actcggtgataaacacttacgaagttgtcattcgtgataagctgcaagagtataaacaaatgataaaactattaccataaactttcaa |
49463437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 29464834 - 29464687
Alignment:
| Q |
19 |
actcggtgaaaaacacttacaaacttgtcatttgcgataagttgtaagaatatacaaaa---tgataaaattattaccacaaactttcaatgatgaagaa |
115 |
Q |
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| T |
29464834 |
actcggtgtaaaacacttacaaacttgtcatttgagataagctgcataggtatacaaaaaaatgacaaaactgtcaccacaaactttcaatgatgaagaa |
29464735 |
T |
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| Q |
116 |
atcaatgattttgtttttg--aatggtttctagccaacaattgcagtt |
161 |
Q |
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| T |
29464734 |
atcaatgattttaattttggaaatggtttctagccaacaattgcagtt |
29464687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 19847001 - 19846917
Alignment:
| Q |
19 |
actcggtgaaaaacacttacaaacttgtcatttgcgataagttgtaagaatatac-aaaatgataaaattattaccacaaacttt |
102 |
Q |
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| T |
19847001 |
actcggtgatgaacacttacaaacttgtcatttgtgataagctgcaagagtatacaaaaatgataaaattgttaacacaaacttt |
19846917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 19846825 - 19846775
Alignment:
| Q |
160 |
tttttgatacgcaattacaagtggtgaaataatgtgtaaaaatgacatgtg |
210 |
Q |
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| T |
19846825 |
tttttgatacacaattacacatgatgaaataatgtttaaaaatgacatgtg |
19846775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 19891964 - 19891854
Alignment:
| Q |
19 |
actcggtgaaaaacacttacaaacttgtcatttgcgataagttgtaagaatat---acaaaatgataaaattattaccacaaactttcaatgatgaagaa |
115 |
Q |
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| T |
19891964 |
actcggtgataaacacttacaaacctgtcatttgagataagctgcaaccgtataaaagaaaatgat-aaattattctcacaaactttcattgaagaataa |
19891866 |
T |
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| Q |
116 |
atcaatgatttt |
127 |
Q |
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|||| ||||||| |
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| T |
19891865 |
atcagtgatttt |
19891854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 29464655 - 29464626
Alignment:
| Q |
181 |
tggtgaaataatgtgtaaaaatgacatgtg |
210 |
Q |
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| T |
29464655 |
tggtgaaataatgtgtaaaaatgacatgtg |
29464626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 1094981 - 1094888
Alignment:
| Q |
19 |
actcggtgaaaaacacttacaaacttgtcatttgcgataagttgtaagaatat---acaaaatgataaaattattaccacaaactttcaatgat |
109 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| || |||| | | | |||||||||||| ||||||||||||||||||||||| |
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| T |
1094981 |
actcggtgaaaaacacttacaaacttgtcatttgtgataagctgcaagagtgtataaaaaaatgataaaactattaccacaaactttcaatgat |
1094888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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