View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_high_5 (Length: 471)
Name: NF2593_high_5
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 2 - 214
Target Start/End: Original strand, 33678260 - 33678472
Alignment:
| Q |
2 |
ttattctgatccttgaaattagggtgtctatatcattatgtagatatgatgcttattttagttactgaatccaattatggaggttactatacccttaatt |
101 |
Q |
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| T |
33678260 |
ttattctgatccttgaaattagggtgtctatatcattatgtagatatgatgcttattttagttactgaatccaattatggaggttactatacccttaatt |
33678359 |
T |
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| Q |
102 |
agacaaaatatatgatgatgctaaagctagtaggtgactgatgcgagctgaacacttccatatgacttgtttcaatacttgtttgactgatactcctgct |
201 |
Q |
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| T |
33678360 |
agacaaaatatatgatgatgctaaagctagtaggtgactgatgcgagctgaacacttccatatgacttgtttcaatacttgtttgactgatactcctgct |
33678459 |
T |
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| Q |
202 |
aaccatttagtta |
214 |
Q |
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| T |
33678460 |
aaccatttagtta |
33678472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 211 - 455
Target Start/End: Original strand, 33680570 - 33680817
Alignment:
| Q |
211 |
gttatatgaaaagaacgtaacaaccgtatcttaaaaaatgcggtgtctgaaccatgtaacctttttgacaaagtgaagctgaatt-ttttatgtggttga |
309 |
Q |
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| T |
33680570 |
gttatatgaaaagaacgtaacaaccgtatcttaaaaaatgcggtgtctgaaccatgtaacctttttgacaaagtgaaactgaattcttttatgtggttga |
33680669 |
T |
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| Q |
310 |
aatcaaatcagcctctcaatataagtgtttccatgtaattgtttattattcgctttctcttcaggtgcctatcagtgtggcataaactgtgactttgtac |
409 |
Q |
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| T |
33680670 |
aatcaaatcagcctctcagcataagtgtttccacgtaattgtttattattcgctttctctttaggtgcttctcagtgtggcataaactgtgactttgtac |
33680769 |
T |
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| Q |
410 |
atttctgagtgag--tctctctcagcacgcctcgtgcggggggattca |
455 |
Q |
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| T |
33680770 |
atttctgagtgagtctctctctcagtacgccttgtgcggggtgattca |
33680817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 322
Target Start/End: Complemental strand, 20114646 - 20114537
Alignment:
| Q |
214 |
atatgaaaagaacgtaacaaccgtatcttaaaaaatgcggtgtctgaaccatgtaacctttttgacaaagtgaagctgaatt-ttttatgtggttgaaat |
312 |
Q |
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||||| |||||||| |||||||| | ||||||||||| || | ||| || |||| ||||| ||||||||||||| |||||| ||||||||||||||| |
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| T |
20114646 |
atatggaaagaacgaaacaaccgcagcttaaaaaatgtggcttatgatccgtgtaccctttctgacaaagtgaagttgaattcgtttatgtggttgaaaa |
20114547 |
T |
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| Q |
313 |
caaatcagcc |
322 |
Q |
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| T |
20114546 |
caaatcagcc |
20114537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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