View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2593_high_8 (Length: 386)
Name: NF2593_high_8
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 5632950 - 5633311
Alignment:
| Q |
18 |
gaattattattcagttacagtttcaacttttgttttgaacaatagctagaagaagatgttggaccttgttttagtaatatcagtaggttattatggtttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5632950 |
gaattattattcagttacagtttcaacttttgttttgaacaatagctagaaga---tgttggaccttggtttagtaatatcagtaggttattatggtttc |
5633046 |
T |
|
| Q |
118 |
atttaactattactactactcactagnnnnnnnnnnnnn-gcttgtgatagtttattatgaagatcaaaatttgccagttagcaatttatttagtgacca |
216 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
5633047 |
atttaactattactactacttactagtttttttggtttttgcttgtgatagtttattatgaatattaaaatttgccagttagcaatttatttagtgacca |
5633146 |
T |
|
| Q |
217 |
ttatatttcggattgcttttgcagagtaaacaataacattacgtttcaagcatcatattatattacatgcttgtgatagttaaacttacacatctttata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5633147 |
ttatatttcggattgcttttgcagagtaaacaataacattacgtttcaagcatcatattatattacatgcttgtgatagttaaacttacacatctttata |
5633246 |
T |
|
| Q |
317 |
tcaaatattgtcatacttgcaatcaattatagaaaaatcatgatttttcatagattcttctcact |
381 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5633247 |
tcaaatattgtcatacttgctatcaattatagaaaaatcatgatttttcatagattcttttcact |
5633311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 5992884 - 5992832
Alignment:
| Q |
18 |
gaattattattcagttacagtttcaacttttgttttgaacaatagctagaaga |
70 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
5992884 |
gaattattattcagttgcagtttcaacctttgttttgaacaatagatagaaga |
5992832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 5457161 - 5457120
Alignment:
| Q |
29 |
cagttacagtttcaacttttgttttgaacaatagctagaaga |
70 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5457161 |
cagttgcagtttcaacttgtgttttgaacaatagctagaaga |
5457120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University