View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_low_1 (Length: 776)
Name: NF2593_low_1
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 73 - 776
Target Start/End: Original strand, 42467643 - 42468360
Alignment:
| Q |
73 |
ttcttgctatcaagaattgggagtgtgttgaggagaccattaccgccagtcatctttacttggctgataatagaatttgaaaacccaggacctgtgtcct |
172 |
Q |
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| T |
42467643 |
ttcttgatagcaagaattgggagtgtgttgaggagaccattaccgccagtcatctttacttggctgataatagaatttgaaaacccaggacctgtgtcct |
42467742 |
T |
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| Q |
173 |
gatctacacgcataagccaaaggatagagatacaaatttgtttgtgcaagatgt---------------------aacgagtgaattgtattgattatga |
251 |
Q |
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| T |
42467743 |
gatctacacgcataaaccaaaggatagagatacaaatttgtttgtgcaagatgtgtttcttgcactctaagagagaacgagtgaattgtattgattatga |
42467842 |
T |
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| Q |
252 |
aaagtgaatgaatgaatacaagtgatacaattacaagtatttatagacttttctaactgtttgggaatcgaatttcctccgcacaaccttcatataataa |
351 |
Q |
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| T |
42467843 |
aaagtgaattaatgaatacaagtgatacaattacaagtatttatagacttttctaactgtttgggaatcgaatttcctccacacaaccttcatataataa |
42467942 |
T |
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| Q |
352 |
agtaattttgtctcattattttgtttttcttttgaatcagtaaagttggttaaatcatggcatcttattcttatagcgagttttctatcagtaaatgttg |
451 |
Q |
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| T |
42467943 |
agtaattttgtctcattattttgtttttcttttgaatcagtaaagttggttaaatcatggcatcttattcttatagcgagttttctatcagtaaatgttg |
42468042 |
T |
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| Q |
452 |
aatcttttatccaagagnnnnnnnngaccagaaaacttcgacacatctgagcaagtaatagctcaataggtatacactcattattaatggaaaagacata |
551 |
Q |
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| T |
42468043 |
aatcttttatccaagagagaaaaaagaccagaaaacttcgacacatctgagcaagtaatagctcaataagcatacactcattattaatggaaaagacata |
42468142 |
T |
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| Q |
552 |
ttgactagtaacaatatatttgtagggatgaaatacataacgaagcttatattattttcatcctgcgtgatgcggatcaatatgtagctagcttacgtaa |
651 |
Q |
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| T |
42468143 |
ttgactagt-acaatatatttgtagggatgaaatacataatgaagcttatattattttcatcctgcgtgatgcaggtcaatatgtagctagcttacataa |
42468241 |
T |
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| Q |
652 |
ttaacaacagaagccaacaattactagatatgtggaaaacaacaaagagtcacacttttattacatcaatttttattc-ttaagtatcacagtactggca |
750 |
Q |
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| T |
42468242 |
ttaacaacagaagccaacaat-------tatgtggaaaacaacaaggagtcacacttttattacatcaatttttattctttaagtatcacagtactggca |
42468334 |
T |
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| Q |
751 |
gcattatgacgattagacagtcatac |
776 |
Q |
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| T |
42468335 |
gcattatgacgattacacagtcatac |
42468360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 308 - 419
Target Start/End: Complemental strand, 49100222 - 49100111
Alignment:
| Q |
308 |
ctgtttgggaatcgaatttcctccgcacaaccttcatataataaagtaattttgtctcattattttgtttttcttttgaatcagtaaagttggttaaatc |
407 |
Q |
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| T |
49100222 |
ctgtttgggaattgattttgctccccacaaccatcaaataataaagcaatttagtctcattattttgttttccttttgaatcactaaagttggttaaatc |
49100123 |
T |
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| Q |
408 |
atggcatcttat |
419 |
Q |
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| T |
49100122 |
atggcatcttat |
49100111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 1351743 - 1351820
Alignment:
| Q |
230 |
gagtgaattgtattgattatgaaaagtgaatgaatgaatacaagtgatacaattacaagtatttatagacttttctaa |
307 |
Q |
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| T |
1351743 |
gagtgaattatattgattatgaaaactgaatgaatgaatacatgggatacaattacaagtatttaaagacttttctaa |
1351820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 27126224 - 27126314
Alignment:
| Q |
25 |
tcttgataaccaaagagtgctttcatctgtttatgccatctttcccaattcttgctatcaagaattgggagtgtgttgaggagaccattac |
115 |
Q |
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| T |
27126224 |
tcttgaaagccaaatagagctttcatctctttatgccgtctttcccaattcttgccatcaagaactgagaatgtattggggagaccattac |
27126314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 30117309 - 30117266
Alignment:
| Q |
52 |
tgtttatgccatctttcccaattcttgctatcaagaattgggag |
95 |
Q |
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| T |
30117309 |
tgtttgtgccatctatcccaattcttgctatcaggaattgggag |
30117266 |
T |
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