View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_low_10 (Length: 399)
Name: NF2593_low_10
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 8496979 - 8496603
Alignment:
| Q |
17 |
cataaccatccactaccaccagcagctatggcaatggcatcaacaacttcagcagcagcaagcatgttactatcaggatcaatgtcaagtgcagatggaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8496979 |
cataaccatccactaccaccagcagctatggcaatggcatcaacaacttcagcagcagcaagcatgttactatcaggatcaatgtcaagtgcagatggaa |
8496880 |
T |
|
| Q |
117 |
taatgacaccaaatttattagcaagagctattctaccttgttcaacaagcatggctacactttcagcttcagcaccatttcctactgttacattagatct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8496879 |
taatgacaccaaatttattagcaagagctattctaccttgttcaacaagcatggctacactttcagcttcagcaccatttcctactgttacattagatct |
8496780 |
T |
|
| Q |
217 |
cacacaaaattcaaacccaaatccattacaatttcaaagacctcaacatgcaccatttcatcaagtacctagtttctttcaaggacagaatcagaatttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8496779 |
cacacaaaattcaaacccaaatccattacaatttcaaagacctcaacatgcaccatttcatcaagtacctagtttctttcaaggacagaatcagaatttt |
8496680 |
T |
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| Q |
317 |
gcacaagcagcagcatcactttataatcaatcaaaattttctggtcttcaattgtctcaagaagttggttcatctca |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8496679 |
gcacaagcagcagcatcactttataatcaatcaaaattttctggtcttcaattgtctcaagaagttggttcttctca |
8496603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 37054088 - 37054263
Alignment:
| Q |
35 |
ccagcagctatggcaatggcatcaacaacttcagcagcagcaagcatgttactatcaggatcaatgtcaagtgcagatggaataatgacaccaaatttat |
134 |
Q |
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| T |
37054088 |
ccagcagctatggaaatggtacaaacaacatcatcagctgcaagaatgttgctgtcaggaccaatgacaagtgcagatggactaatgaacccaaattacc |
37054187 |
T |
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| Q |
135 |
tagcaagagctattctaccttgttcaacaagcatggctacactttcagcttcagcaccatttcctactgttacatt |
210 |
Q |
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| T |
37054188 |
tcacaagagcaatccttccttattcttcaagcatagcaactatctcagcatcagctccatttccaactgttacatt |
37054263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 55365413 - 55365217
Alignment:
| Q |
17 |
cataaccatccactaccaccagcagctatggcaatggcatcaacaacttcagcagcagcaagcatgttactatcaggatcaatgtcaagtgcagatggaa |
116 |
Q |
| |
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|||| ||||||||| ||||| || |||||| |||||||||| || || |||| || || | | |||||||||| || |||||||||||||| ||||| |
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| T |
55365413 |
catagccatccactcccacctgctgctatgccaatggcatcgaccaccgcagctgctgctaccgtgttactatctgggtcaatgtcaagtgctgatgggg |
55365314 |
T |
|
| Q |
117 |
taatgacaccaaatttattagcaagagctattctaccttgttcaacaagcatggctacactttcagcttcagcaccatttcctactgttacattaga |
213 |
Q |
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| |||| || |||||| |||| ||| | ||| ||| || | |||||||| ||||| ||||| |||||||||||||||||||| ||| |||| |
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| T |
55365313 |
tgatgaaccccaatttactagccagaattcttcctaattgctcttctagcatggccacactctcagcatcagcaccatttcctactgtgacactaga |
55365217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 21194175 - 21194272
Alignment:
| Q |
17 |
cataaccatccactaccaccagcagctatggcaatggcatcaacaacttcagcagcagcaagcatgttactatcaggatcaatgtcaagtgcagatgg |
114 |
Q |
| |
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||||||||| | ||||||||| |||| | ||||||||||||||||| || |||||||| ||| |||| |||||| ||||| |||||| |||||| |
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| T |
21194175 |
cataaccatgctctaccaccaacagcaaaagcaatggcatcaacaacaacatcagcagcatcaatgctactttcaggaccaatgacaagtgtagatgg |
21194272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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