View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2593_low_13 (Length: 346)

Name: NF2593_low_13
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2593_low_13
NF2593_low_13
[»] chr1 (4 HSPs)
chr1 (14-331)||(5054003-5054320)
chr1 (149-288)||(46446005-46446147)
chr1 (149-288)||(46672020-46672162)
chr1 (83-112)||(46446193-46446222)
[»] chr8 (7 HSPs)
chr8 (137-283)||(9860641-9860787)
chr8 (148-297)||(9841986-9842135)
chr8 (14-116)||(9860829-9860931)
chr8 (14-116)||(9842188-9842290)
chr8 (209-298)||(27360973-27361062)
chr8 (148-247)||(9847066-9847165)
chr8 (61-111)||(9903122-9903172)
[»] chr5 (10 HSPs)
chr5 (155-288)||(39572366-39572499)
chr5 (148-288)||(225362-225502)
chr5 (155-288)||(39576372-39576505)
chr5 (202-309)||(2326337-2326444)
chr5 (136-298)||(4146511-4146673)
chr5 (225-306)||(4100463-4100544)
chr5 (22-116)||(39576559-39576653)
chr5 (61-111)||(3561339-3561389)
chr5 (209-298)||(3561513-3561602)
chr5 (63-111)||(225560-225608)
[»] scaffold0658 (1 HSPs)
scaffold0658 (209-298)||(2835-2924)
[»] chr3 (2 HSPs)
chr3 (15-116)||(7257009-7257110)
chr3 (225-288)||(7256845-7256908)
[»] chr6 (1 HSPs)
chr6 (222-264)||(112636-112678)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 5054003 - 5054320
Alignment:
Q  14 gaaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgta 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5054003 gaaactaaactgttgacgtgaggccatacctcaaaattgcccatggtaatgccctcgatctttgtcaaatgtttggtcttgacattgtaaccaaaatgta 5054102  T
Q  114 tgtgtttgatgtctcttccaagtagagatactttaaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5054103 tgtgtttgatgtctcttccaagtagagatactttaaagatgatttgatcgttgatccacaaacgaaataccacatacaaagtatcaagctcatgaccgca 5054202  T
Q  214 agcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaaatcttta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5054203 agcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatatagatctgaaatgttgtataaaaatcttta 5054302  T
Q  314 tgcgcaatacaacaaaag 331  Q
    |||||||||||| |||||    
T  5054303 tgcgcaatacaagaaaag 5054320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 149 - 288
Target Start/End: Complemental strand, 46446147 - 46446005
Alignment:
Q  149 aagatgatttgatcgttgatccacaaacgaaataccac---atacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcat 245  Q
    ||||||||||||||||||| ||| ||||||||||||||   | ||||| ||| |||||||||||| || ||||| |||||||||||| ||||||||||||    
T  46446147 aagatgatttgatcgttgacccaaaaacgaaataccaccgaagacaaattattaagctcatgaccacaggcagccacataatcaaaatgtcccatctcat 46446048  T
Q  246 gataatgagaccattttcccgtatcaaaatccaaaatgtagat 288  Q
    ||||| |||||||||  |||| |||||||||||||||||||||    
T  46446047 gataaagagaccattcccccgaatcaaaatccaaaatgtagat 46446005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 46672020 - 46672162
Alignment:
Q  149 aagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaa---gcagcaacataatcaaaaggtcccatctcat 245  Q
    ||||| |||| ||||||||||||||| | ||||||||   | ||||| ||||||| |||||| |||   ||||| |||||||||||| |||||||| |||    
T  46672020 aagataatttaatcgttgatccacaagcaaaataccaacgaaaaaatttcaagcttatgaccacaacaagcagccacataatcaaaatgtcccatcgcat 46672119  T
Q  246 gataatgagaccattttcccgtatcaaaatccaaaatgtagat 288  Q
    ||||  ||||||||||||| | |||||||||||||||||||||    
T  46672120 gatagagagaccattttcctgaatcaaaatccaaaatgtagat 46672162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 46446222 - 46446193
Alignment:
Q  83 tgtttggtcttgacattgtaaccaaaatgt 112  Q
    ||||||||||||||||||||||||||||||    
T  46446222 tgtttggtcttgacattgtaaccaaaatgt 46446193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 283
Target Start/End: Complemental strand, 9860787 - 9860641
Alignment:
Q  137 agagatactttaaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtc 236  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||| ||||| ||||||| | |||||| ||||| |||||||  ||||||||||||||||    
T  9860787 agagctactttaaagataatttgatggttgatccacaaacgaaatgccacaaacaaaatctgaagctcttgaccacaagcagacacataatcaaaaggtc 9860688  T
Q  237 ccatctcatgataatgagaccattttcccgtatcaaaatccaaaatg 283  Q
    |||||||||||||| ||||||||||||| | ||||  ||||||||||    
T  9860687 ccatctcatgataaagagaccattttcctgaatcatgatccaaaatg 9860641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 297
Target Start/End: Complemental strand, 9842135 - 9841986
Alignment:
Q  148 aaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatga 247  Q
    |||||| ||||||||||||||||||||||||||   ||||| |  | ||| ||||  |||||| |||||||  |||||||||||||||||||||||||||    
T  9842135 aaagataatttgatcgttgatccacaaacgaaacttcacatccgtagtattaagcctatgaccacaagcagacacataatcaaaaggtcccatctcatga 9842036  T
Q  248 taatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgt 297  Q
    | | ||||||||||||| | ||||||||||| ||||||||| ||| ||||    
T  9842035 tgaagagaccattttcctgaatcaaaatccagaatgtagatttgatatgt 9841986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 9860931 - 9860829
Alignment:
Q  14 gaaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgta 113  Q
    |||||||||||||||| ||||| ||||||||||||||  ||||    ||||||||| ||| ||||||| ||| | || |||||||||||||||||||| |    
T  9860931 gaaactaaactgttaatgtgagaccatacctcaaaatcacccacatcaatgccctcgatcattgtcaattgtctagttttgacattgtaaccaaaatgaa 9860832  T
Q  114 tgt 116  Q
    |||    
T  9860831 tgt 9860829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 9842290 - 9842188
Alignment:
Q  14 gaaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgta 113  Q
    ||||||| |||||||  |||| | ||||| ||||| ||||| | |  |||| |||||||||||||||| ||  ||||||| |||||||||||||||||||    
T  9842290 gaaactagactgttagtgtgaagacatacttcaaagttgccaacgtcaatgtcctcaatctttgtcaattgcctggtcttcacattgtaaccaaaatgta 9842191  T
Q  114 tgt 116  Q
    |||    
T  9842190 tgt 9842188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 27361062 - 27360973
Alignment:
Q  209 ccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgtt 298  Q
    |||||||||||  | ||||||||||||||||||||||||||| ||  |||||||||   ||||||||||||| | ||||| ||| |||||    
T  27361062 ccgcaagcagcctcgtaatcaaaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatatgtt 27360973  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 9847165 - 9847066
Alignment:
Q  148 aaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatga 247  Q
    |||||| |||||||| |||||||| |||||||||||||||  || ||||||||   || |||| |||||| | | | || |||||||| |||||||||||    
T  9847165 aaagataatttgatcattgatccaaaaacgaaataccacactcataatatcaataccaggaccacaagcacccatacaaacaaaaggttccatctcatga 9847066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 9903172 - 9903122
Alignment:
Q  61 aatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg 111  Q
    |||| ||||||||||| |||| ||||||||||| |||||||||| ||||||    
T  9903172 aatgtcctcaatctttatcaattgtttggtcttcacattgtaacaaaaatg 9903122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 155 - 288
Target Start/End: Complemental strand, 39572499 - 39572366
Alignment:
Q  155 atttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgag 254  Q
    ||||||||||||||||| | || ||||| | ||  || |||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||| |||    
T  39572499 atttgatcgttgatccatagacaaaatatctcaatcataatatcaagctggttaccacaagcagcaacataatcaaaaggtcccatctcatgataaggag 39572400  T
Q  255 accattttcccgtatcaaaatccaaaatgtagat 288  Q
    |||||||||  | |||||||||||||||||||||    
T  39572399 accattttcttgaatcaaaatccaaaatgtagat 39572366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 148 - 288
Target Start/End: Complemental strand, 225502 - 225362
Alignment:
Q  148 aaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatga 247  Q
    |||||||||||||||||||||||||||||||||| ||||| | ||||||  |||| || |||||||| |||| |||||| |||||||||  |||||||||    
T  225502 aaagatgatttgatcgttgatccacaaacgaaatgccacacaaaaaatactaagcccacgaccgcaaacagccacataaccaaaaggtcagatctcatga 225403  T
Q  248 taatgagaccattttcccgtatcaaaatccaaaatgtagat 288  Q
    ||| ||||||||||||  | ||||||||| || ||||||||    
T  225402 taaagagaccattttcttgcatcaaaatctaacatgtagat 225362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 288
Target Start/End: Complemental strand, 39576505 - 39576372
Alignment:
Q  155 atttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgag 254  Q
    |||||||||||||||||||||||||||| | ||  || ||||| |||||  | ||| | ||||||||||||||  ||||||||||||||||||||| |||    
T  39576505 atttgatcgttgatccacaaacgaaatatcgcactcataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagag 39576406  T
Q  255 accattttcccgtatcaaaatccaaaatgtagat 288  Q
    |||||| ||| | ||||||||||||| |||||||    
T  39576405 accattctcctgaatcaaaatccaaagtgtagat 39576372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 309
Target Start/End: Original strand, 2326337 - 2326444
Alignment:
Q  202 ctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgta 301  Q
    ||||||||| |||| ||| ||||||||||| |||||||||||||||||| ||||| ||||||| | |||||||| |||||||||||| ||||||||| ||    
T  2326337 ctcatgaccacaagtagccacataatcaaatggtcccatctcatgataaagagacaattttcctgaatcaaaattcaaaatgtagatttgaaatgttcta 2326436  T
Q  302 taaaaatc 309  Q
    | ||||||    
T  2326437 ttaaaatc 2326444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 136 - 298
Target Start/End: Complemental strand, 4146673 - 4146511
Alignment:
Q  136 tagagatactttaaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggt 235  Q
    ||||||||||  || ||| ||||||| ||||||||| |||| ||| |||||| ||| ||||| || |||||| ||||||||||    | |||||||||||    
T  4146673 tagagatactcgaaggataatttgatggttgatccagaaacaaaacaccacacacagaatatgaatctcatggccgcaagcagtcggaaaatcaaaaggt 4146574  T
Q  236 cccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgtt 298  Q
    ||||||||||||||| |||||||||||||    |||||||||||||  ||||| |||||||||    
T  4146573 cccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgtt 4146511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 4100463 - 4100544
Alignment:
Q  225 aatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaa 306  Q
    |||||||||||||||||||||||||| |||||||||||||    |||||||||||||||||||| ||||||||| |||||||    
T  4100463 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaa 4100544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 39576653 - 39576559
Alignment:
Q  22 actgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtatgt 116  Q
    |||||||  |||| ||||||| |||||||  |||  || ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  39576653 actgttagtgtgaagccatacttcaaaatcacccgaggcaatgccctcaatctttgtcaattgtttggtcttgacattgtaactaaaatgtatgt 39576559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 3561339 - 3561389
Alignment:
Q  61 aatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg 111  Q
    ||||||||| |||||||||||  || | |||||||||||||||||||||||    
T  3561339 aatgccctctatctttgtcaatcgtctagtcttgacattgtaaccaaaatg 3561389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 3561513 - 3561602
Alignment:
Q  209 ccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgtt 298  Q
    ||||||||| | |||||||||||  || ||||||| |||||| | ||||||||||| | ||  | |||||||||||| || |||||||||    
T  3561513 ccgcaagcaaccacataatcaaagagtaccatctcgtgataaagtgaccattttcctgaattgatatccaaaatgtaaatttgaaatgtt 3561602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 225608 - 225560
Alignment:
Q  63 tgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg 111  Q
    ||||||||||||||||||  ||| | |||||||||||||||| ||||||    
T  225608 tgccctcaatctttgtcagttgtctagtcttgacattgtaactaaaatg 225560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 2835 - 2924
Alignment:
Q  209 ccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgtt 298  Q
    |||||||||||  | ||||||||||||||||||||||||||| ||  |||||||||   ||||||||||||| | ||||| ||| |||||    
T  2835 ccgcaagcagcctcgtaatcaaaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatatgtt 2924  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 7257110 - 7257009
Alignment:
Q  15 aaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtat 114  Q
    |||||| |||||||  ||||| |||||| ||||||||||||||   |||| |||||||||| ||||| ||  ||||||| ||||| |||||||||| |||    
T  7257110 aaactagactgttagtgtgagaccatacttcaaaattgcccattccaatgtcctcaatcttagtcaattgcctggtcttcacattataaccaaaatatat 7257011  T
Q  115 gt 116  Q
    ||    
T  7257010 gt 7257009  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 7256908 - 7256845
Alignment:
Q  225 aatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagat 288  Q
    |||||||||||||||||  ||||||| ||||||||||||  | ||||||||| |||||||||||    
T  7256908 aatcaaaaggtcccatcatatgataaagagaccattttcttgaatcaaaatctaaaatgtagat 7256845  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 112636 - 112678
Alignment:
Q  222 cataatcaaaaggtcccatctcatgataatgagaccattttcc 264  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||    
T  112636 cataatcaaaaggccccatctcatgataaagagtccattttcc 112678  T

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