View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2593_low_14 (Length: 317)
Name: NF2593_low_14
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 26691161 - 26690878
Alignment:
| Q |
20 |
catgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaatcatgttcatgagt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26691161 |
catgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtgcatatcatcaagaatcatgttcatgagt |
26691062 |
T |
|
| Q |
120 |
ttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtctccaatttaaccatg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
26691061 |
ttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagtgcaaccattgtcaaagtctccaatttaaccatg |
26690962 |
T |
|
| Q |
220 |
tcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctctcacc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690961 |
tcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctctcacc |
26690878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 26732472 - 26732189
Alignment:
| Q |
20 |
catgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaatcatgttcatgagt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26732472 |
catgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtgcatatcatcaagaatcatgttcatgagt |
26732373 |
T |
|
| Q |
120 |
ttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtctccaatttaaccatg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
26732372 |
ttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagagcaaccattgtcaaagtctccgatttaaccatg |
26732273 |
T |
|
| Q |
220 |
tcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctctcacc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26732272 |
tcataatttgatcccaatgtagggtctactatttgttcaaccaaagatttcatttctaataatttccttcttttctctctcacc |
26732189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 26695322 - 26695039
Alignment:
| Q |
20 |
catgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaatcatgttcatgagt |
119 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
26695322 |
catgactttgaattgaattaaggaagataaacatgaaaactaataaccatcaaagaaggctcttagtttgtgcatatcatgaagaatcatgttcatgagt |
26695223 |
T |
|
| Q |
120 |
ttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtctccaatttaaccatg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
26695222 |
ttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagagcaaccattgtcaaagtctccaatttaaccatg |
26695123 |
T |
|
| Q |
220 |
tcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctctcacc |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
26695122 |
tcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctgataaattccttcttttctctctcacc |
26695039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 257
Target Start/End: Original strand, 26674996 - 26675154
Alignment:
| Q |
99 |
tcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtg |
198 |
Q |
| |
|
|||||||||||||| |||| |||| ||| | |||||||||| ||||||| | ||||| | |||||||||| ||| ||||| | |||||| |||| || |
|
|
| T |
26674996 |
tcaagaatcatgttgatgactttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgcc |
26675095 |
T |
|
| Q |
199 |
aaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttc |
257 |
Q |
| |
|
|| |||| ||||| ||| |||||||||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
26675096 |
aaggtcttcaattgaacaatgtcataatttaatcccaatgcagggtcaactatttgttc |
26675154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University