View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_low_18 (Length: 273)
Name: NF2593_low_18
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_18 |
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| [»] chr5 (7 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 273
Target Start/End: Original strand, 38180544 - 38180795
Alignment:
| Q |
22 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38180544 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaa |
38180643 |
T |
|
| Q |
122 |
aatgctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaa |
221 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180644 |
aatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaat |
38180743 |
T |
|
| Q |
222 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagct |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180744 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagct |
38180795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 273
Target Start/End: Complemental strand, 38190587 - 38190336
Alignment:
| Q |
22 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaa |
121 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38190587 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaa |
38190488 |
T |
|
| Q |
122 |
aatgctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaa |
221 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38190487 |
aatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaat |
38190388 |
T |
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| Q |
222 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagct |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38190387 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagct |
38190336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 273
Target Start/End: Original strand, 38207768 - 38208019
Alignment:
| Q |
22 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38207768 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaa |
38207867 |
T |
|
| Q |
122 |
aatgctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaa |
221 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38207868 |
aatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaat |
38207967 |
T |
|
| Q |
222 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagct |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38207968 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagct |
38208019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 273
Target Start/End: Complemental strand, 38217812 - 38217561
Alignment:
| Q |
22 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38217812 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaa |
38217713 |
T |
|
| Q |
122 |
aatgctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaa |
221 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38217712 |
aatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaat |
38217613 |
T |
|
| Q |
222 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagct |
273 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38217612 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagct |
38217561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 273
Target Start/End: Original strand, 38455904 - 38456155
Alignment:
| Q |
22 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38455904 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaa |
38456003 |
T |
|
| Q |
122 |
aatgctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaa |
221 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38456004 |
aatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaat |
38456103 |
T |
|
| Q |
222 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagct |
273 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
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| T |
38456104 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagct |
38456155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 25 - 273
Target Start/End: Complemental strand, 26033709 - 26033461
Alignment:
| Q |
25 |
cgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaat |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
26033709 |
cgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcgaaaaat |
26033610 |
T |
|
| Q |
125 |
gctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaacta |
224 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
26033609 |
gccgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaa |
26033510 |
T |
|
| Q |
225 |
aagtttttgagttctatataaagtatggtgaattcaaatggtctaagct |
273 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
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| T |
26033509 |
aagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagct |
26033461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 270
Target Start/End: Original strand, 38447013 - 38447258
Alignment:
| Q |
25 |
cgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaat |
124 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || |
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| T |
38447013 |
cgatactaaaaaaggaaaatggtcaaaagaagaggatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattgggacgaggtatcaaagaac |
38447112 |
T |
|
| Q |
125 |
gctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaacta |
224 |
Q |
| |
|
| || ||| || | ||| | |||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| ||| || |
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|
| T |
38447113 |
acaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaata |
38447212 |
T |
|
| Q |
225 |
aagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
270 |
Q |
| |
|
|||| ||| |||| || |||| ||||| ||||||||||||||| |
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| T |
38447213 |
aagtctttcagttacgtaagaagtttggtggattcaaatggtctaa |
38447258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 32 - 273
Target Start/End: Complemental strand, 53352110 - 53351864
Alignment:
| Q |
32 |
aaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaa-----cgaggtatcaaaaaatgc |
126 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
53352110 |
aaaaaaggaaaatggtcaaaagaagaggatgaaatgttaaaagcatatgtggaaaaacatggaaccagaaattggaatggaacgaggtatcaagaaatgc |
53352011 |
T |
|
| Q |
127 |
tgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| || |||||||||||||||||||| ||| |
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| T |
53352010 |
ggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaa |
53351911 |
T |
|
| Q |
227 |
gtttttgagttctatataaagtatggtgaattcaaatggtctaagct |
273 |
Q |
| |
|
|| ||| ||||| || || | |||||||||||||||||||||||| |
|
|
| T |
53351910 |
gtctttcggttctttaacaactttggtgaattcaaatggtctaagct |
53351864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 38342328 - 38342405
Alignment:
| Q |
43 |
atggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaa |
120 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| |
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| T |
38342328 |
atggtcaaaagaagaggatgaaatattaaaagcatatgttgaaaaacatggaaccggaaattggaaagaggtatcaaa |
38342405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 38446521 - 38446598
Alignment:
| Q |
43 |
atggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaa |
120 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| |
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| T |
38446521 |
atggtcaaaagaagaggatgaaatattaaaagcatatgttgaaaaacatggaaccggaaattggaaagaggtatcaaa |
38446598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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