View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_low_2 (Length: 643)
Name: NF2593_low_2
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_2 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 15 - 627
Target Start/End: Original strand, 123338 - 123950
Alignment:
| Q |
15 |
atttgtgacaccagcctaattgcaagtgttattccaaaagttgtggataatagattaagactataatataaaaatcaataaatagaaacctcaatcataa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
123338 |
atttgtgacaccagcctaattgcaagtgttattccaaaagttgtggataataaattaagactataatataaaaatcaataaatagaaacctcaatcataa |
123437 |
T |
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| Q |
115 |
ccctttgcagatcagcagctgtagttccaagtaattggttgcactcacgatcccagaagaaaaacttagttgcaaatccattatattccacttccagctc |
214 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
123438 |
ccctttgcagatcagcagctgtagttccaagcaattgattgcactcacgatcccagaagaaaaacttagttgcaaatccattatattccacttccagctc |
123537 |
T |
|
| Q |
215 |
caacttaaaactaaatcatgaaaaacttcttattaataaacagaaatagcatttaaccgtatagttctgagatatgtaccagagattgatagcattggtc |
314 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
123538 |
caacttaaaactacatcatgaaaaacttcttattaataaacagaaagagcatttaaccgtatagttctgagatatgtaccggagattgatagcattggtc |
123637 |
T |
|
| Q |
315 |
tcatggttttcagaacagaatagcggtaaggtatcaccctttgcag-ccctgttgcacttagagcatgctttgtagtaccacccattcttggatggtttg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
123638 |
tcatggttttcagaacagaatagcggtaaggtatcaccctttgcagcccctgttgcacttagtgcacgctttgtagtaccacccattcttggatggtttg |
123737 |
T |
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| Q |
414 |
acttgattaatcttcacaacagtcacacacaaagttgtctgtgggagaaaataaaaagacacaccatgatatgtattagttaatttatagatcatattat |
513 |
Q |
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| T |
123738 |
acttgattaa-cttcacaacaatcacacacaaagttgtctgtgggagaaaataaaaagacacaccatgatatgtattagttaatttatagatcatattat |
123836 |
T |
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| Q |
514 |
nnnnnnnggaaaataataatgagttgagaattaggtatctaataaggaagaagatagaccacctccgtgagttgcaagatgtcatgtagtggtagaacaa |
613 |
Q |
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| T |
123837 |
aaaaaaaggaaaataataatgagttgagaattaggtatctaataaggaagaagatagaccacctccgtgagttgcaagatgtcatgtagtggtagaacaa |
123936 |
T |
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| Q |
614 |
cagcactaccaatg |
627 |
Q |
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|||||||||||||| |
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| T |
123937 |
cagcactaccaatg |
123950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 297 - 453
Target Start/End: Original strand, 22078422 - 22078578
Alignment:
| Q |
297 |
agattgatagcattggtctcatggttttcagaacagaatagcggtaaggtatcaccctttgcagccctgttgcacttagagcatgctttgtagtaccacc |
396 |
Q |
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|||||||||||||||||||| || |||| ||| || || ||||| ||||||||||||||| | ||||||||||| | |||||||||||||||||||| |
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| T |
22078422 |
agattgatagcattggtctcgtgtttttggtcacacaacagtggtaaagtatcaccctttgcaactctgttgcacttggtgcatgctttgtagtaccacc |
22078521 |
T |
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| Q |
397 |
cattcttggatggtttgacttgattaatcttcacaacagtcacacacaaagttgtct |
453 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| |
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| T |
22078522 |
cattcttggatggtttcacttgattgatcttcacaacagtcacacacacagttgtct |
22078578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 22078217 - 22078326
Alignment:
| Q |
114 |
accctttgcagatcagcagctgtagttccaagtaattggttgcactcacgatcccagaagaaaaacttagttgcaaatccattatattccacttccagct |
213 |
Q |
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|||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| | |||||| |||||||||| | |||||||||| ||||||| | |
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| T |
22078217 |
accctttgaagatcagcagctgtagttccaagcaattcattgcactcacgatcccataggaaaaatttagttgcaacttcattatattcgacttccactt |
22078316 |
T |
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| Q |
214 |
ccaacttaaa |
223 |
Q |
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| T |
22078317 |
ccaacttaaa |
22078326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 287 - 453
Target Start/End: Original strand, 23697416 - 23697582
Alignment:
| Q |
287 |
tatgtaccagagattgatagcattggtctcatggttttcagaacagaatagcggtaaggtatcaccctttgcagccctgttgcacttagagcatgctttg |
386 |
Q |
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|||||||| ||||| ||||||||||||||||| |||| || || || ||||| |||||||||||||||||||||||||| || | |||||||||| |
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| T |
23697416 |
tatgtaccttagattaatagcattggtctcatgtttttggtcacgcaacagtggtaaagtatcaccctttgcagccctgttgcatttggtgcatgctttg |
23697515 |
T |
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| Q |
387 |
tagtaccacccattcttggatggtttgacttgattaatcttcacaacagtcacacacaaagttgtct |
453 |
Q |
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| T |
23697516 |
tagtaccacccattcttggatggtttgacttgattgattttaagaacaatcacacacacagttgtct |
23697582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 23697207 - 23697330
Alignment:
| Q |
100 |
aaacctcaatcataaccctttgcagatcagcagctgtagttccaagtaattggttgcactcacgatcccagaagaaaaacttagttgcaaatccattata |
199 |
Q |
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|||||||| |||| ||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||| || ||||| ||| ||| ||||||||| |
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| T |
23697207 |
aaacctcagtcatggccctttgaagatccgcagctgtagttccaagcaattcattgcactcacgatcccagagaaagaactttgtttcaactccattata |
23697306 |
T |
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| Q |
200 |
ttccacttccagctccaacttaaa |
223 |
Q |
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||| ||||||| ||| |||||||| |
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| T |
23697307 |
ttcaacttccacctctaacttaaa |
23697330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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