View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_low_20 (Length: 273)
Name: NF2593_low_20
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 45702207 - 45702080
Alignment:
| Q |
92 |
tattgactatctttagattcggtgttctaacttatcacccatacataaaggattttgtttatccaatatttggcgaccaatctcctttaaattcactgtg |
191 |
Q |
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| T |
45702207 |
tattgactatctttagattcggtgttctaacttatcacccatacataaaggattttgtttatccaatatttggcgaccaatctcctttaaattcactgtg |
45702108 |
T |
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| Q |
192 |
cagtcatgttcttctgggtatctatgca |
219 |
Q |
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| T |
45702107 |
cagtcatgttcttctgggtatctatgca |
45702080 |
T |
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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 45702053 - 45702005
Alignment:
| Q |
218 |
cactcgaaccctaatggtccaaccttcttgttgcaactcttgcacctat |
266 |
Q |
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| T |
45702053 |
cactcgaaccctaatggtccaaccttcttgttgcaactcttgcacctat |
45702005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 219
Target Start/End: Complemental strand, 47440621 - 47440507
Alignment:
| Q |
105 |
tagattcggtgttctaacttatcacccatacataaaggattttgtttatccaatatttggcgaccaatctcctttaaattcactgtgcagtcatgttctt |
204 |
Q |
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| T |
47440621 |
tagattcggtattttaacttatcacccatacacaaaggattttgtttctctaatatttgacgaccaatcttctttaaatccactttgcatgtatgttctt |
47440522 |
T |
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| Q |
205 |
ctgggtatctatgca |
219 |
Q |
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| T |
47440521 |
ctggatatctatgca |
47440507 |
T |
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