View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_low_23 (Length: 256)
Name: NF2593_low_23
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_23 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 49 - 256
Target Start/End: Complemental strand, 5633549 - 5633342
Alignment:
| Q |
49 |
tattgtacttagctcttattattttgtttttctatttagtttagttcaatgcttcaatatacacatttgagatattagattaaagtcagatacaattaaa |
148 |
Q |
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| T |
5633549 |
tattgcacttagctcttattattttgtttttctatttagtttagttcaatgcttcaatatacacatttgagatattcgattaaagtcagatacaattaaa |
5633450 |
T |
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| Q |
149 |
atgttnnnnnnntaattttctaatcaacgaagagttaggtctagcagaaaggttaaactctcagaactaaagctcaaatcacagcaaaaagagatactca |
248 |
Q |
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| T |
5633449 |
atgttaaaaaaataattttctaatcaacgaagagttaggtctagcagaaaggttaaactctcagaactagagttcaaatcacagctaaaagagatactca |
5633350 |
T |
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| Q |
249 |
aatttaat |
256 |
Q |
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| T |
5633349 |
aatttaat |
5633342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 5633568 - 5633536
Alignment:
| Q |
1 |
aatattaaaggaagatgaatattgtacttagct |
33 |
Q |
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| T |
5633568 |
aatattaaaggaagatgaatattgcacttagct |
5633536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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