View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_low_25 (Length: 250)
Name: NF2593_low_25
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_25 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 17989213 - 17988972
Alignment:
| Q |
9 |
gagatgaaagtgttgcaaagttcaagaaatgctgcctgattcgcaggattaacattttcactgatgacttgtaatttgttcagtccattcacctggctta |
108 |
Q |
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| T |
17989213 |
gagatgaaagtgttgcaaagttgaagaaatgctgcctgattcgcaggatcaacattttcactgatgacttgtaatttgttcagttcattcacctggctta |
17989114 |
T |
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| Q |
109 |
tctcattaggtgccttttgtaggaatacttgtagtagacgcaagagagcaggaacatttgcggaacttttccaaaagtgaggtgataaaacacattcaaa |
208 |
Q |
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| T |
17989113 |
tctcattaggcgccttttgtaggaatacttggagtagacgcaagagagcaggaatatttgcggaacttttccaaaagtgaggtgataaaacacattcaaa |
17989014 |
T |
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| Q |
209 |
tatctgcatgtatattggtgggataggtggtctgtttaaccc |
250 |
Q |
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| T |
17989013 |
tatctgcatgtatattggtgggataggtggtctgtttaaccc |
17988972 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 248
Target Start/End: Original strand, 9751390 - 9751536
Alignment:
| Q |
102 |
tggcttatctcattaggtgccttttgtaggaatacttgtagtagacgcaagagagcaggaacatttgcggaacttttccaaaagtgaggtgataaaacac |
201 |
Q |
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||||| || ||||| ||||||||||| ||||| | || |||||||||| || |||||||| ||||| ||||||||| | | |||||| |||| | |
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| T |
9751390 |
tggctgatttcatttggtgccttttgaaggaaggcctggagtagacgcacaagggcaggaacgcttgcgcttcttttccaagaatcaggtgacaaaagaa |
9751489 |
T |
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| Q |
202 |
attcaaatatctgcatgtatattggtgggataggtggtctgtttaac |
248 |
Q |
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| T |
9751490 |
tctcaaatatctgcatgtagattggtgggatgggtggtctgtttaac |
9751536 |
T |
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