View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2593_low_3 (Length: 581)
Name: NF2593_low_3
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_3 |
 | |
|
| [»] scaffold0057 (2 HSPs) |
| | |
|
| [»] scaffold0695 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 17 - 579
Target Start/End: Complemental strand, 42471685 - 42471130
Alignment:
| Q |
17 |
actttttcatgaatgataaatacgtactattggattatgctccgggaacccccaacgatgaggttttgaacgggcctgaatttgttcgtgatgggttctg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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|
| T |
42471685 |
actttttcatgaatgataaatacgtactattggattatgctccgggaacccccaacgatgaggttttgaacggacctgaatttgttcgtgatgggttccg |
42471586 |
T |
|
| Q |
117 |
ttcacttgctcataccgtatttggaagctatggaattgattgtgcctttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctctc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42471585 |
ttcacttgctcataccgtatttggaagctatggaattgattgtgcctttgacacggataacacctaggcattcatattttatgaaaacctttgtgctctc |
42471486 |
T |
|
| Q |
217 |
atagactatgctccgcagtcagatgaagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42471485 |
atagactatgctccgcagtcagatgaagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacg |
42471386 |
T |
|
| Q |
317 |
gaatcgatgctgcgttcaggtcaaccacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42471385 |
gaatcgatgctgcgttcaggtcaaccacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttca |
42471286 |
T |
|
| Q |
417 |
aagtatcgagaacattagcgatgggtttacttgtttccgtggcactgtctttgaaaatggattggatgcagcttttgcctctcacaaaatcaacgaagca |
516 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
42471285 |
aagtatcgagaacatcagcgatgggtttacttgtttccatggcactgtctttgaaaatggattggatgcagctttttcctctcacaagatcaatgaagca |
42471186 |
T |
|
| Q |
517 |
tactttttcaaagatgaatacaacacatgtgtcctatttgttccaggctcaacagacatgtat |
579 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42471185 |
tac-------aagatgaatacaacacatgtgtcctatttgttccaggctcaacagacatgtat |
42471130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 529
Target Start/End: Original strand, 3352096 - 3352608
Alignment:
| Q |
17 |
actttttcatgaatgataaatacgtactattggattatgctccgggaacccccaacgatgaggttttgaacgggcctgaat-ttgttcgtgatgggttct |
115 |
Q |
| |
|
||||||||||||||||||| || | |||||||| ||||| |||||||| ||||||| || ||||| | ||||| || | ||||||| |||||||| |
|
|
| T |
3352096 |
actttttcatgaatgataagtatatcctattggactatgcaccgggaactggcaacgataagattttgtatgggcc-gagtcttgttcgcgatgggttta |
3352194 |
T |
|
| Q |
116 |
gttcacttgctcataccgtatttggaagctatggaattgattgtgcctttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctct |
215 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||| |||||| ||||| |||| ||||||| ||| |||||||| |||||||||||| |||||||||| |
|
|
| T |
3352195 |
gatcacttgctcataccatatttggaagctatggaatagattgttcctttaacaccgataacaacgaagcattcatcttttatgaaaacttttgtgctct |
3352294 |
T |
|
| Q |
216 |
catagactatgctccgcagtcagatgaagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaac |
315 |
Q |
| |
|
|||||||||||| || | || | | | |||||||||||| || ||||||| ||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
3352295 |
catagactatgcaccatactcgggcaacgtcaaaataatctcaggccctaagaaaattgctgacatgtttccttttttcaaaggaaccatgtttgaaaag |
3352394 |
T |
|
| Q |
316 |
ggaatcgatgctgcgttcaggtcaaccacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttc |
415 |
Q |
| |
|
||| | |||||||| || |||||||| | | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
3352395 |
ggagtagatgctgcatttaggtcaactaagggcaaataagtttacttattcaaaggagacaagtatgctcgtatagattatggaaccaaccgtctggttc |
3352494 |
T |
|
| Q |
416 |
aaagtatcgagaacattagcgatgggtttacttgtttccgtggcactgtctttgaaaatggattggatgcagcttttgcctctcacaaaatcaacgaagc |
515 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||| |||||||||||||| |||||||||||||| | |||||||||||||| ||||| || | || ||||| |
|
|
| T |
3352495 |
aaagtatcaagaacattatcgacgggtttatgtgtttccgtggcacaatctttgaaaatggaattgatgcagcttttgcttctcataagactaatgaagc |
3352594 |
T |
|
| Q |
516 |
atactttttcaaag |
529 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3352595 |
ctactttttcaaag |
3352608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 29 - 400
Target Start/End: Complemental strand, 42046486 - 42046115
Alignment:
| Q |
29 |
atgataaatacgtactattggattatgctccgggaacccccaacgatgaggttttgaacgggcctgaatttgttcgtgatgggttctgttcacttgctca |
128 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||| |||||||| || ||||| | ||||| ||||| |||||||||| |||||||||| |
|
|
| T |
42046486 |
atgataagtacgtgctattggattatgctcctggaaccaccaacgataagattttgcatgggccatctcttgttagtgatgggtttaaatcacttgctcc |
42046387 |
T |
|
| Q |
129 |
taccgtatttggaagctatggaattgattgtgcctttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctctcatagactatgct |
228 |
Q |
| |
|
||| ||||| |||||||| |||||||||||| |||||||| ||||||| | |||||||||| ||| ||||||| |||||||||| |||||||||||| |
|
|
| T |
42046386 |
tacaatatttcaaagctatgcaattgattgtgcatttgacaccgataacaaccaggcattcatctttcatgaaaatttttgtgctctaatagactatgct |
42046287 |
T |
|
| Q |
229 |
ccgcagtcagatgaagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctg |
328 |
Q |
| |
|
|| | || | |||||| ||||||| |||||||| | ||| ||||| ||||||||||||||||||| || |||||||||| |||||| || || | |
|
|
| T |
42046286 |
ccatactcttgcaacgacaaattaatctccggtcctaaaaaaattgctgacgtgtttccttttttcaaaggaacggtgtttgaaagcggaatagacgccg |
42046187 |
T |
|
| Q |
329 |
cgttcaggtcaaccacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaa |
400 |
Q |
| |
|
| | |||||||| | | |||||||||||||||||| ||||||||| | |||||||||||||| ||||||| |
|
|
| T |
42046186 |
catataggtcaactaagggcaaagaagcttacttatttaaaggagaccaatatgctcgtatagactatggaa |
42046115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 118 - 404
Target Start/End: Original strand, 14452478 - 14452764
Alignment:
| Q |
118 |
tcacttgctcataccgtatttggaagctatggaattgattgtgcctttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctctca |
217 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
14452478 |
tcacatgctcatacaatatttggaagctatggaattgattgtgcctttgacaccgataacaacgaggcattcatcttttatgaaaatttttgtgctctca |
14452577 |
T |
|
| Q |
218 |
tagactatgctccgcagtcagatgaagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacgg |
317 |
Q |
| |
|
|||||||||| || || || || |||||||||||||| | |||||||||| ||| | ||||||||||||||||||||||| ||||| || ||||| || |
|
|
| T |
14452578 |
tagactatgcaccacactccgacaaagacaaaataatcactggtcctaagaaaattgccgacatgtttccttttttcaaaggaaccgtattcgaaaatgg |
14452677 |
T |
|
| Q |
318 |
aatcgatgctgcgttcaggtcaaccacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaa |
404 |
Q |
| |
|
||| || ||||| | || ||||| | |||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
14452678 |
aatagacgctgcagtaagatcaactgtgggcaaagaagttcacttattcaaaggagacaagtatgctcgtatagactatggcaccaa |
14452764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 135 - 500
Target Start/End: Complemental strand, 37514 - 37149
Alignment:
| Q |
135 |
atttggaagctatggaattgattgtgcctttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctctcatagactatgctccgcag |
234 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| ||| ||| |||||| ||| | |||||| || ||||||||| ||||| |||| ||| || |
|
|
| T |
37514 |
atttggaagcaatggaatagattgtgcctttgacaccgatgacaacgaggcgttcgtcttttatcaaggtctttgtgctaagatagaatatgttccacaa |
37415 |
T |
|
| Q |
235 |
tcagatgaagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctgcgttca |
334 |
Q |
| |
|
| || |||||||||||||||| ||||||| || ||| | || |||||||||||||| |||| || | |||||| | ||||| || ||||| |||| |
|
|
| T |
37414 |
actgacaaagacaaaataatctcaggtcctatgaaaattgcggaaatgtttccttttttagaaggaacgggttttgaacatggaatagacgctgcattca |
37315 |
T |
|
| Q |
335 |
ggtcaaccacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattag |
434 |
Q |
| |
|
||||||| ||||||| | |||||| |||| |||||| ||||||||||||||||| ||||| || || ||||| ||||||| |||| | |||| | |
|
|
| T |
37314 |
ggtcaactttgaacaaagaggtttacttgttcagaggagataagtatgctcgtatagactatggcacgaacagtcttgttcaaattatcagggacatcaa |
37215 |
T |
|
| Q |
435 |
cgatgggtttacttgtttccgtggcactgtctttgaaaatggattggatgcagcttttgcctctca |
500 |
Q |
| |
|
| ||||||||||||||||| | ||| |||||||||| ||| | ||||| |||||||| ||||| |
|
|
| T |
37214 |
cagcgggtttacttgtttccgagacacgatctttgaaaagggaatcgatgcggcttttgcttctca |
37149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 500
Target Start/End: Complemental strand, 63688 - 63205
Alignment:
| Q |
17 |
actttttcatgaatgataaatacgtactattggattatgctccgggaacccccaacgatgaggttttgaacgggcctgaatttgttcgtgatgggttctg |
116 |
Q |
| |
|
|||||||||| |||||||| | | ||||||||||||||||| |||||| ||||||| || |||| | || ||| |||||||| ||||||| |
|
|
| T |
63688 |
actttttcatcaatgataagctcttgctattggattatgctcccggaaccagcaacgataagattttatatggacctatttttgttcgccatgggtttcc |
63589 |
T |
|
| Q |
117 |
ttcacttgctcataccgtatttggaagctatggaattgattgtgcctttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctctc |
216 |
Q |
| |
|
|| |||| | ||||| |||||||||| ||||||| ||||||||||||||||| ||| ||| ||||| ||| | |||||| || ||||||||| |
|
|
| T |
63588 |
atcgcttgataataccaaatttggaagcaatggaatagattgtgcctttgacaccgatgacaatgaggcgttcgtcttttatcaaggtctttgtgctaag |
63489 |
T |
|
| Q |
217 |
atagactatgctccgcagtcagatgaagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacg |
316 |
Q |
| |
|
||||| ||| |||| || | || |||||||||||||||| ||| ||| || ||| | || |||||||||||||| |||| || | |||||| | | |
|
|
| T |
63488 |
atagaatatactccacacactgacaaagacaaaataatctcaggttctatgaaaattgcggaaatgtttccttttttagaaggaacgggttttgaacatg |
63389 |
T |
|
| Q |
317 |
gaatcgatgctgcgttcaggtcaaccacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttca |
416 |
Q |
| |
|
|||| || || || ||||||||||| ||||||| | |||||| |||| |||||||||||||||||||||||| ||||| || || ||||| ||||| |
|
|
| T |
63388 |
gaatagacgccgcattcaggtcaactttgaacaaagaggtttacttgttcagaggagacaagtatgctcgtatagactatggcacgaacagtcttgttca |
63289 |
T |
|
| Q |
417 |
aagtatcgagaacattagcgatgggtttacttgtttccgtggcactgtctttgaaaatggattggatgcagcttttgcctctca |
500 |
Q |
| |
|
|| |||| | |||| | | ||||||||||||||||| | ||| |||||||||| ||| | ||||| |||||||| ||||| |
|
|
| T |
63288 |
aattatcagggacatcaacagcgggtttacttgtttccgagacacgatctttgaaaagggaatcgatgcggcttttgcttctca |
63205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0695 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0695
Description:
Target: scaffold0695; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 5464 - 5380
Alignment:
| Q |
146 |
atggaattgattgtgcctttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctctcatagactatgctcc |
230 |
Q |
| |
|
||||||| ||||||||||||||||| || || ||| |||| | ||| || | || |||||||||||| | |||||||||||||| |
|
|
| T |
5464 |
atggaatagattgtgcctttgacactgacaaaacccaggcttacattttctctgcaaacctttgtgccttgatagactatgctcc |
5380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 14114843 - 14114927
Alignment:
| Q |
146 |
atggaattgattgtgcctttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctctcatagactatgctcc |
230 |
Q |
| |
|
||||||| ||||||||||||||||| || || ||| |||| | ||| || | || |||||||||||| | |||||||||||||| |
|
|
| T |
14114843 |
atggaatagattgtgcctttgacactgacaaaacccaggcttacattttctctgcaaacctttgtgccttgatagactatgctcc |
14114927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 14125164 - 14125248
Alignment:
| Q |
146 |
atggaattgattgtgcctttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctctcatagactatgctcc |
230 |
Q |
| |
|
||||||| ||||||||||||||||| || || ||| |||| | ||| || | || |||||||||||| | |||||||||||||| |
|
|
| T |
14125164 |
atggaatagattgtgcctttgacactgacaaaacccaggcttacattttctctgcaaacctttgtgccttgatagactatgctcc |
14125248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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